Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3867g00009 ATGATCATGAAGCATCACCGTGTCTTCTTCCTGTTCTTTTTATTTTTCTTACCGTTTTTCACCTTCAGTCTCCACCACAATGATACTCATGCACTCACCCTCTTCCGCCTCCAAACCGACCTTCACGGCTACCTTCTTTCCAACTGGACCGGCGGAGACGCCTGCGCCGCTGAATGGCGCGGCGTCCTCTGCTCCCCGAACGGCCGTGTTACCGCCCTCTCCCTACCTTCCCTCAACCTCCGTGGCCCCCTCGACCCTCTCACTCCCCTCACCCACCTACGCCTCCTTGACCTCCACGACAATCGCTTGAACGGCACCGTTTCGCCGCTCCTCTCCAACTGCACCAACATCCAACTGCTCTACCTCGCCGGCAACGACTTCTCCGGCGAGATCCAGCCGGAGATATCCTCCCTCAAATCCCTTCTCCGCCTCGACCTCTCCGACAACAACATTCACGGCAAGGTTGACTTTCTCTCCAACTTAACTCAACTCATCACACTGAGACTCCAGAACAACCTTCTCTCCGGTGAAATCCCTGACCTATCTGCCTCCATGCAAAACCTCAGAGAAGTCAACCTCACAAACAACGCCTTCTACGGTCGTTTACCAAACCCCATGCTGAAGAAATTCGGTGTCACGGCCTTCTCAGGTAACGAGGGTTTATGTGGTGCAACACCGTTACCTGTGTGTTCCTTCACCACAAACCCTCCAAACGACAATGAGAATAACAACGAAAATGAACCTTCCCAGACAGTTCCTTCAAACCCTAGTTCCTTCCCAGAAACCAGCATAATAGCTCGACCGGGGAAGGAGCGCCATAAGGGTTTAAGTCCCGGTGCCATTGTGGCAATTGTTGTGGGGAATTGTGTGGCGTTGCTTGTGATGACATCATTTCTAGTGGCGCATTGTTGCGCGAGGGGAAGAGGGTCTAGTTTGGTGGGGAGTGGGGAGAGTTATGGGAAGAGGAAGAGTGGGAGCAGTTACAATGGGAGTGAGAAGAAGGTGTATGGGAGTGGGGGTGGTGAGAGTGATGGGACTACGGGCACTGATAGGAGTAGGCTTGTGTTTTTTGATCGGAGGAGTGAGTTTGAGTTGGAGGATCTGCTGCGTGCATCGGCGGAGATGCTTGGGAAGGGTAGTTTAGGGACGGTTTATAGGGCGGTGCTTGATGATGGGTGCACCGTGGCGGTGAAGAGGCTGAAGGATGCCAACCCTTGCGCCAGGCATGAGTTTGAGCAGTATATGGATGTGATTGGGAAGCTTAAGCACTCTAATGTTGTGAGACTCAAAGCCTATTACTATGCCAAAGAGGAAAAGCTTCTTGTCTATGACTATCTCTCCAATGGAAGCTTGCATGCTCTTCTTCATGGGAACCGTGGTCCGGGGAGGATTCCATTGGACTGGACTACTAGAATAAGCCTGGTGTTGGGAGCAGCAAGAGGTCTAGCGAAGATCCACGCAGAGTACAGCGCAGCAAAAGTGCCTCACGGGAACGTGAAATCTTCGAACGTGCTTCTAGACAAAAACGGCGTCGCCTGCATCTCGGACTTCGGGCTATCACTCCTCTTGAACCCGGTTCACGCCATTGCACGACTGGGAGGGTACAGGGCCCCCGAACAGGAACAGCACAAGAGGCTGTCTCAGCAAGCTGACGTGTACAGCTTCGGGGTGTTGCTGTTGGAAGTTCTCACAGGAAGAGCTCCTTCGTCGCAGTACCCTTCACCGGCTCGTCCCAGAATGGAGGAAGAGGAACAGGCCGTGGTGGACCTTCCCAAATGGGTTCGCTCCGTCGTGAAGGAAGAGTGGACCGCAGAGGTGTTTGACCAGGAGCTTTTGCGCTACAAGAACATCGAGGAAGAGCTTGTGTCCATGTTGCATGTGGGGTTGGCCTGTGTGGTGGCGCAGCCGGAGAAGAGGCCAACTATGGAAGAAGTTGTGAAAATGGTTGAGGAGATCAGGGTGGAGCAATCGCCACTTGGGGAGGACTATGATGAATCGCGCAATTCGCTTTCACCTTCCATTCCCACCACTGAAGATGGTCTACCTTAG 2049 0.5329 MIMKHHRVFFLFFLFFLPFFTFSLHHNDTHALTLFRLQTDLHGYLLSNWTGGDACAAEWRGVLCSPNGRVTALSLPSLNLRGPLDPLTPLTHLRLLDLHDNRLNGTVSPLLSNCTNIQLLYLAGNDFSGEIQPEISSLKSLLRLDLSDNNIHGKVDFLSNLTQLITLRLQNNLLSGEIPDLSASMQNLREVNLTNNAFYGRLPNPMLKKFGVTAFSGNEGLCGATPLPVCSFTTNPPNDNENNNENEPSQTVPSNPSSFPETSIIARPGKERHKGLSPGAIVAIVVGNCVALLVMTSFLVAHCCARGRGSSLVGSGESYGKRKSGSSYNGSEKKVYGSGGGESDGTTGTDRSRLVFFDRRSEFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCARHEFEQYMDVIGKLKHSNVVRLKAYYYAKEEKLLVYDYLSNGSLHALLHGNRGPGRIPLDWTTRISLVLGAARGLAKIHAEYSAAKVPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYRAPEQEQHKRLSQQADVYSFGVLLLEVLTGRAPSSQYPSPARPRMEEEEQAVVDLPKWVRSVVKEEWTAEVFDQELLRYKNIEEELVSMLHVGLACVVAQPEKRPTMEEVVKMVEEIRVEQSPLGEDYDESRNSLSPSIPTTEDGLP 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3867g00009 682 MobiDBLite consensus disorder prediction 311 347 - -
Vium3867g00009 682 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Vium3867g00009 682 ProSiteProfiles Leucine-rich repeat profile. 140 162 IPR001611 GO:0005515
Vium3867g00009 682 Pfam Protein kinase domain 374 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3867g00009 682 Gene3D Transferase(Phosphotransferase) domain 1 446 670 - -
Vium3867g00009 682 MobiDBLite consensus disorder prediction 656 682 - -
Vium3867g00009 682 FunFam pollen receptor-like kinase 1 341 445 - -
Vium3867g00009 682 Gene3D Phosphorylase Kinase; domain 1 346 445 - -
Vium3867g00009 682 SUPERFAMILY Protein kinase-like (PK-like) 374 650 IPR011009 -
Vium3867g00009 682 Gene3D Ribonuclease Inhibitor 21 93 IPR032675 -
Vium3867g00009 682 MobiDBLite consensus disorder prediction 233 262 - -
Vium3867g00009 682 ProSiteProfiles Protein kinase domain profile. 370 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3867g00009 682 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 654 IPR046959 -
Vium3867g00009 682 MobiDBLite consensus disorder prediction 233 263 - -
Vium3867g00009 682 Gene3D Ribonuclease Inhibitor 94 231 IPR032675 -
Vium3867g00009 682 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 446 661 - -
Vium3867g00009 682 SUPERFAMILY L domain-like 26 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3867g00009 Vium-Chr3867 100105 102623 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3867g00009 21 678 Receptor kinase-like Gene Family AT2G36570 67.556 0.0 874
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium3867g00009 Pkinase 1.9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3867g00009 - - gmx:100804135 1150.58