Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3867g00007 ATGGCCTCTTGCGACGACGACGACGACTTCTCTCTCCTCCGTGACGATAACCACCACCTCCACCAGCCTTACGCCCCGCACCACCACTTCTCCCCCTCCGCCGTCGCCGTCGCTCCTGTCCCACCCAAATCCGTTGCTGACGACGCCGACGACTATGGAAACCCCTTCGACGACGACGGTGGCAGCGAAAAGCGGAAGGACCGGGAGGAGATCGGCGAGGGAGCCACGTCGTACGGATTCAACAAGAGATCTAAGGCTCCGCAGTCGAGTGCAGGCAGTGCGGAGTACAGAAAGGACAGGGAGGAGTGGAGCGACACGGCCATCGTGTGCCTCCTCGAGGCTTACACGGAGAAGTTCACACAACTGAATCGGGGAAACCTGAGAGGAAGGGATTGGGAGGAGGTTGCGTTTGTGGTGAGCGAACGGTGCGAGAACCAATCGAAGAGCGTGGAACAGTGTAAGAACAAGGTAGATAACCTAAAAAAGAGGTACAAATTGGAGCGACAAAGAATGAGCAGTGGCTGCATTTCTACCAGTCACTGGCCTTGGTTCAAACAATTGGAGCAGATCGTCGGGAATTCTCTTCCGGCAAAATTCTCTGATGAGGATAAAGCGGTTGTTTCTGCCGGAACTTCGCCCAGACAATCGAAAAGATATGGAGTAGCAACACCCAGCACAGGTCAAGTGAATAACATTAGGTCAAAAGCACTGACAAACCTTAGATGGCGGAGGGTAGTCTTCAAAATTAGTGGAGCAGCTCTTACTGGATCTGATACCTGCAACATGGACCCTAAGGTGGCTATGTTAGTTTCAAGAGAAGTTGCCATAGCTTCCCGCCTTGGTGTTGAGGTGGCGATTGTTGTTGGAGGCTGTAATTTCTTCTCTGGAGATGCATGGGTAAATGCGACAGGTCTAGAAAGATGCACTGCATACCAAGTTGGCATGATGGCAACAGTGATGAATTCAATATTGCTCCAATCGACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAATTGCCATGCAGGAGTTTGCTGAACTATACAATAGGCAGCGGGCTATCAGACATCTTGAGAAAGGAAGAGTTATTATATTTGGTGGCATTAGTTTTGGTGCTGGCAATCCACTTTTCTCAACTGACATAGCTGCAGCTCTTCGTGCTTCAGAGCTTAATGCTGAAGCAGTCCTCAAGGGTACTAATGTAGACGGTGTGTATGACTGCAACTCACGGGATAACAATTTCACTTTTGAGCACATATCCTTCAGAGAGCTGGGCTCAAGAGGAATCACTTCTATGGATGCGTCAGCGCTGACTTTATGCAAGGAAAATGCCATTCCTGTGGTGGTTTTTAATCTACTGGAGCCTGGGAACATCTCTAAAGCCTTATGTGGAGAACAAGTTGGCACACTAATTGATCAAACTGGAGCAGTCGCATGA 1446 0.4965 MASCDDDDDFSLLRDDNHHLHQPYAPHHHFSPSAVAVAPVPPKSVADDADDYGNPFDDDGGSEKRKDREEIGEGATSYGFNKRSKAPQSSAGSAEYRKDREEWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVAFVVSERCENQSKSVEQCKNKVDNLKKRYKLERQRMSSGCISTSHWPWFKQLEQIVGNSLPAKFSDEDKAVVSAGTSPRQSKRYGVATPSTGQVNNIRSKALTNLRWRRVVFKISGAALTGSDTCNMDPKVAMLVSREVAIASRLGVEVAIVVGGCNFFSGDAWVNATGLERCTAYQVGMMATVMNSILLQSTLEKMGVQTRVQTSIAMQEFAELYNRQRAIRHLEKGRVIIFGGISFGAGNPLFSTDIAAALRASELNAEAVLKGTNVDGVYDCNSRDNNFTFEHISFRELGSRGITSMDASALTLCKENAIPVVVFNLLEPGNISKALCGEQVGTLIDQTGAVA 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3867g00007 481 MobiDBLite consensus disorder prediction 57 73 - -
Vium3867g00007 481 FunFam Aspartate/glutamate/uridylate kinase family protein 103 166 - -
Vium3867g00007 481 Pfam Amino acid kinase family 244 454 IPR001048 -
Vium3867g00007 481 MobiDBLite consensus disorder prediction 19 98 - -
Vium3867g00007 481 FunFam Uridylate kinase isoform A 234 480 - -
Vium3867g00007 481 Hamap Uridylate kinase [pyrH]. 240 475 IPR015963 GO:0005737|GO:0006221|GO:0033862
Vium3867g00007 481 SUPERFAMILY Carbamate kinase-like 241 474 IPR036393 -
Vium3867g00007 481 Coils Coil 143 170 - -
Vium3867g00007 481 CDD AAK_UMPK-PyrH-Ec 243 475 IPR015963 GO:0005737|GO:0006221|GO:0033862
Vium3867g00007 481 Pfam Myb/SANT-like DNA-binding domain 100 190 IPR044822 -
Vium3867g00007 481 Gene3D - 233 480 IPR036393 -
Vium3867g00007 481 PANTHER URIDYLATE KINASE 96 479 - -
Vium3867g00007 481 Gene3D - 103 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3867g00007 Vium-Chr3867 94955 100098 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3867g00007 103 194 Trihelix Transcription Factor Family AT3G14180 38.298 4.09e-16 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium3867g00007 AA_kinase 1.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3867g00007 - - gmx:100805459 820.846