Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3867g00005 ATGGAACCCAATGGGCTAGGCGCGGGAATGTTCTCTGGGTTGGTGGGAGTGGAGAACTCTTTGCCTCCGCAGCAACAGCAAAACCCTCACCATTTGCAAAACCACCCCCAGATGGTTCCCTATGGCCCACACCACGACACCGATCCACATCATCAGCATCATAATCAATCGATCAAACAAGGGTACCCTCAATATTCTTCGGTCAAGACCAAACAACAGCAACAAAGTGCCCTCAGTGACGATGATGATGACACCTCGGACCCCAAGAAGAAGGTGTCGCTGTGGCAGAGAATGAAGTGGACTGACACCATGGTGAGGCTTTTGATAATGGCGGTTTATTACATTGGTGATGAGGGTGGCTCGGAAGGGACTGATAAGAAGAAGTCCTCGGGTATGCTGCAGAAGAAAGGGAAGTGGAAGTCGGTGTCGCGGGCCATGATGGAGAAAGGGTTCTATGTTTCTCCTCAACAGTGTGAGGATAAGTTCAATGACTTGAACAAGAGGTATAAGAGGGTGAATGATATTCTCGGGAAGGGAACTGCTTGCAGGGTTGTGGAGAATCAGAGTTTGTTGGAGACGATGGAGTTGTCATCAAAGATGAAAGAGGAGGTTAAGAAGTTGCTCAATTCCAAACATTTGTTCTTCAGGGAAATGTGTGCTTACCATAATAGTTGTGGTCATGTGAATAACAATGCTCCACAGCAAGGAGAGACCGGGGGTGAGGTGTCTCAGTCTCAGGCTCAGGCTCAAGTGCAGCCTCAGCAGCAGCAACAGCCTCCGCAGCAGCAACAACAGCAACGTTGTTTTCATTCATCAGAGGTGGGGAATTTGGGGGGTTTGAGGATGTTGAAAATGGGAAATGGGGAAGAGAATGATGATGATTCGGATGAGGATGATGAGTCTGAGGATGATTCGGATGAGGAGGAAGATGATTCGGGAGAAGGTGGTTCAAGGGGTCATGTGGGGCATGGACATGAAGATATGGAGGATGATAATGATGGAAGGTCAATGAGGAAGAAGGCAAGGAAAGTGAGGGGAGTTGGTGTGTCAGCAGTGATGATGCAGCAACTGAATGCTGAGGTGAGTGGTGTGTTCCAAGATGGGGGTAGGAGTGCTTGGGAGAAGAAGCAATGGATGAGGAGCAGGATACTGCAGTTGGAGGAGCAGCAATTGAGCTATCAGAGTCAATCATATGAGTTGGAGAAACAAAGGTTGAAATGGGCAAGGTTTAGCAGCAAGAAGGAGAGGGAAATGGAGAGAGCCAAACTTGAAAATGAACGAAGGAGGCTTGAGAATGATAGAATGGTTTTGCTCATTCGACAGAAGGAGCTTGAGCTGATGAGTCTTCAACACCAACAACAGCAACAACAACATTCTTCTACTTAG 1386 0.4791 MEPNGLGAGMFSGLVGVENSLPPQQQQNPHHLQNHPQMVPYGPHHDTDPHHQHHNQSIKQGYPQYSSVKTKQQQQSALSDDDDDTSDPKKKVSLWQRMKWTDTMVRLLIMAVYYIGDEGGSEGTDKKKSSGMLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQSLLETMELSSKMKEEVKKLLNSKHLFFREMCAYHNSCGHVNNNAPQQGETGGEVSQSQAQAQVQPQQQQQPPQQQQQQRCFHSSEVGNLGGLRMLKMGNGEENDDDSDEDDESEDDSDEEEDDSGEGGSRGHVGHGHEDMEDDNDGRSMRKKARKVRGVGVSAVMMQQLNAEVSGVFQDGGRSAWEKKQWMRSRILQLEEQQLSYQSQSYELEKQRLKWARFSSKKEREMERAKLENERRRLENDRMVLLIRQKELELMSLQHQQQQQQHSST 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3867g00005 461 MobiDBLite consensus disorder prediction 230 272 - -
Vium3867g00005 461 MobiDBLite consensus disorder prediction 313 338 - -
Vium3867g00005 461 MobiDBLite consensus disorder prediction 230 342 - -
Vium3867g00005 461 Gene3D - 100 171 - -
Vium3867g00005 461 MobiDBLite consensus disorder prediction 1 91 - -
Vium3867g00005 461 PANTHER F16F4.11 PROTEIN-RELATED 12 450 - -
Vium3867g00005 461 MobiDBLite consensus disorder prediction 76 91 - -
Vium3867g00005 461 Coils Coil 411 440 - -
Vium3867g00005 461 MobiDBLite consensus disorder prediction 18 34 - -
Vium3867g00005 461 MobiDBLite consensus disorder prediction 56 75 - -
Vium3867g00005 461 Pfam Myb/SANT-like DNA-binding domain 97 220 IPR044822 -
Vium3867g00005 461 MobiDBLite consensus disorder prediction 290 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3867g00005 Vium-Chr3867 71724 73624 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium3867g00005 Myb_DNA-bind_4 2.3e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3867g00005 - - gmx:100816661 606.675