Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3867g00002 ATGGAGTGGAATGGAAGCACAAGACGTTATGTTCCTCGACCAGACTCTTCCTTCGGCTTCCTTTACAACTACAACTACACACCATACCCAGGAATTGAAGTGAAGCAACAAAATATAGCAGAGTCAAGTTCGTCCATGGAAAAAATGAACTGCGGGAACCAGGACAAGAAGAAGAGATTAACGACTGACCAGTTGGACTCGTTGGAGAGTAGTTTTCAGAAGGAGATAAAGCTAGACCCTGATAGGAAGATGAAGCTTTCCAAAGAGTTAGGGCTTCAACCTCGCCAAATTGCTGTTTGGTTCCAAAATAGGCGTGCAAGGTGGAAGAACAAGCAACTCGAACACTTGTACGATTCACTTAAACAGGAATTTGATGTCATATCCAAGGAGAAACAGAAGCTAGAGGAAGAGGTAATGAAGTTGAAGGGTATGCTGAGAGAGCAAGCTTCTAGAACACAAGTGTCAACAGGTTACACAGAAATCTCTGGAGAAGAAACAGTAGAAAGCACGTCAGAGGCTCTGCGTTGCTCCAAACGGAGAACACTGCAGCAGCAGCAGCAGCATCATCATCATCATCAGAATATTGGAGAAGGAAACTGTTCTTTCACTTTGGAAGATTACAACACAGTTCCAGTACTACCCTACTGGCCTGGGGTCCCTTACTATCCCTAA 672 0.4435 MEWNGSTRRYVPRPDSSFGFLYNYNYTPYPGIEVKQQNIAESSSSMEKMNCGNQDKKKRLTTDQLDSLESSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDSLKQEFDVISKEKQKLEEEVMKLKGMLREQASRTQVSTGYTEISGEETVESTSEALRCSKRRTLQQQQQHHHHHQNIGEGNCSFTLEDYNTVPVLPYWPGVPYYP 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3867g00002 223 CDD homeodomain 56 112 IPR001356 GO:0003677
Vium3867g00002 223 Gene3D - 46 119 - -
Vium3867g00002 223 Pfam Homeobox associated leucine zipper 111 145 IPR003106 GO:0006355|GO:0043565
Vium3867g00002 223 MobiDBLite consensus disorder prediction 41 61 - -
Vium3867g00002 223 SMART HOX_1 54 115 IPR001356 GO:0003677
Vium3867g00002 223 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 45 187 IPR045224 GO:0003700
Vium3867g00002 223 Pfam Homeodomain 56 110 IPR001356 GO:0003677
Vium3867g00002 223 SUPERFAMILY Homeodomain-like 42 113 IPR009057 -
Vium3867g00002 223 Coils Coil 103 151 - -
Vium3867g00002 223 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Vium3867g00002 223 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Vium3867g00002 223 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Vium3867g00002 223 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Vium3867g00002 223 FunFam Putative homeobox-leucine zipper protein ATHB-51 53 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3867g00002 Vium-Chr3867 26799 28868 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3867g00002 1 141 Homeobox Transcription Factor Family AT5G03790 51.852 1.78e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium3867g00002 Homeodomain 5.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3867g00002 - - gmx:100778007 400.208