Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3867g00001 ATGGTTCTCAAGACCGAACTTTGCCGTTTCAGTGGTGCAAAAATCTACCCTGGTAAAGGCATAAGATTTGTGCGTGGTGATTCTCAGGTCTTCCTCTTTGCGAACTCCAAATGCAAGAGGTATTTCCACAACCGATTGAAGCCTTCAAAGCTCACCTGGACTGCCATGTACAGGAAACAGCATAAGAAGGATATTGCCCAAGAAGCTGTGAAAAAGAGGCGTAGGGCCACAAAGAAACCTTACTCAAGGTCCATTGTTGGTGCTACACTGGAAGTTATTCAGAAAAAAAGAACAGAGAAACCAGAAGTTCGCGATGCTGCTAGAGAAGCTGCTCTGCGCGAAATCAAAGAAAGGGTAAAGAAAACAAAGGATGAGAAGAAGGCAAAGAAGGCTGAAGTTCAGGCAAAGTTACAAAAATCCCAAGGCAAAGGTGCTGTCAGCAAGGGTGCTGCACCCAAAGGACCCAAGCTTGGTGGTGGCGGTGGCAAGCGCTGA 495 0.4667 MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERVKKTKDEKKAKKAEVQAKLQKSQGKGAVSKGAAPKGPKLGGGGGKR 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3867g00001 164 Gene3D - 69 138 - -
Vium3867g00001 164 FunFam 60S ribosomal protein L24 3 64 - -
Vium3867g00001 164 MobiDBLite consensus disorder prediction 118 164 - -
Vium3867g00001 164 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Vium3867g00001 164 PANTHER 60S RIBOSOMAL PROTEIN L24 4 155 IPR000988 -
Vium3867g00001 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Vium3867g00001 164 SMART 4TRASH 8 46 IPR011017 -
Vium3867g00001 164 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Vium3867g00001 164 Coils Coil 112 143 - -
Vium3867g00001 164 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Vium3867g00001 164 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Vium3867g00001 164 MobiDBLite consensus disorder prediction 118 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3867g00001 Vium-Chr3867 5814 7958 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3867g00001 1 157 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 84.713 8.99e-87 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3867g00001 K02896 - gmx:100499884 254.988