Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3866g00009 ATGGTTTCGACGAGACGGAGTGGATCTCTCTCTGCCAACAACTCCAAACGATCTTCCTCATCGGAAAGCAAACCTCCTTCGCCGAAGCGTCAGAAGGTCGACAATGGTGGTTCGTCGGAGAAACCGGTGCCGACACCGGCGGAGAATTCGAAGGATTTACGTACTTCGGAGCCCGTGCCTGATCCTGGGGAATGTGGCTCTGCCGACGTTCAGATCGCCGGAGCCGGTTCCGCCGATGGAGTGAGCTCCGGCAAAGTCGACGCTACGCCGGCTGTGCCTGTCACGGCACCGATTGCTGATGCCGCATGTCCGTCCTTCTCTTCGTGGAGTGTGTATCAGAAACAGATTCCGAATATCGAGGGAGGACCGTGGTGCAGGTTTTTGTCTCAGTCTGCACAGAATCCTAATGTTGCTGTTTGCATACCCAATTTCACGATTGGTTCTAATAGAAGTTGCAACTTTGCACTAAAGGATCAGACTATAAGTGGAAATTTATGCAAGATCAAGCTCACGCAGCGCGATGGAAGTGTTGTAGCTGTGTTAGAAAGTACGGGTAGCAAAGGATCTGTGCTAGTAAATGGAACGCATGTCAAGAAGAATAGCAGCTGTGTGCTTAACTCGGGTGATGAAGTTGTTTTTGGTGTTCTTGGAAATCATTCTTATATTTTCCAGCAACTTAATACCGAGGTTGCATTAAGGGGTGCGGAAGTTCCAAGTGGTGTTGGGAAATATCTGCAGCTTGAAAGGAAAAGTGGAGACCCTTCAGCTGTGGCCGGGGCCTCTATTTTGGCTTCTCTTTCCATCAAACAGGACCTTACAAGATGGAAATCTCCAACTCATACCTCTAGTAAACCTCACCCGGGTACTGACGTCTCTAGTCATCCTATTCATGATAGTACAGAAATTGAGCTTGATGCCTCAGAGTCAACTCCAAATGTGCATACTGATAAAGCAGAAGATGCTCAAACAAATGAGAAGAATTCAACAATGGATTGCAATCCGGATGCTGGTGCAGAGGCAGGCAATGTAAAACTCTCTGGGGTTAATGATTTCCTAAGGCCTTTCTTCAGGATCTTAGCTCGACCTAGTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTATTGGAAGAAAAAAATGGGACGCTGGACATGCAGGCTGCATCAACTTTGGGTACATCTGTACGCTCAGCTGTGTTTAAAGAAGATGTTCATGCTGCTATATTGGATGGGAAAGAAATAGATGTTTCTTTTGACAACTTCCCTTACTATTTAAGTGAGAGCACAAAAAATGTCTTGGTGGCTGCTTGCTATATGCACCTAAGGCATAAAGAACATGAAAAGTTTACTACAGATCTTACAACCATAAACCCTCGTATTCTCCTCTCAGGACCTGCAGGGTCAGAAATATATCAAGAGATGTTGGCAAAGGCACTTGCAAAATACTTTGGAGCTAAGCTGCTAATATTTGATAGTCATTTGCTTTTGGGTGGTTTATCTTCCAAGGAAGCTGAGCTACTCAAAGATGGATTAAATGCTGAAAAATCTCTCAGCAGCACTAAGCAAAGTCCTACAGCAACAAAAATGGCTGGGAGCGTGGATCCACCTGCTACTGAAACAGAGACACCTAGCTCTTCAAATGCACCTTCACTGGCCTTTGACTCTCAACCTAAGTTGGAAACTGATAACATGCCATCCACCTCTGGGACAGCCAAAAGTTGCTTGTTCAAATTAGGTGATAGGGTGAAATTTAGCTGTTCATCTTCTTGTGGAGTATATCAAACATCTTCAAGGGGGCCATCTAATGGAGGTCGGGGGAAGGTTGTCTTACTATTTGATGATAATCCCTTGTCTAAAATTGGTGTGAGATTTGATAAACCCATACCTGATGGAGTTGATCTTGGTGGTGCCTGTGAGGGAGGTCAAGGTTTTTTCTGCAATGTCACCGATCTTCGCTTGGAAAGTAGCGCTGTAGAAGAACTGGACAAATTACTTATTCATTCGCTGTTTGAGGTTGTTTTTAGTGAAAGTAGAAATGCACCATTCATTTTGTTCATGAAAGATGCTGAGAAGTCTATTGTAGGAAATGGAGACTCATATGCATTTAAAAGTAAGCTTGAAAGTCTTCCAAACAATGTGGTCGTAATAGGTTCTCACACTCAAAATGACAGTCGTAAGGAAAAGTCACATCCTGGTGGTTTGCTTTTTACAAAATTTGGTAGCAATCAGACTGCCCTTCTTGACCTGGCTTTCCCTGATAGTTTTGGACGATTGCATGACAGAGGGAAGGAGGTTCCAAAGCCAAATAGAACTTTGACTAAGCTCTTCCCAAATAAAATTATAATTCACATGCCTCAGGATGAGGCTCTTCTAGCATCTTGGAAGCAGCAACTGGATCGAGACGTTGAAACTCTCAAAATCAAAGGGAATTTACATCACTTGCGTGCAGTTTTGGGACGTTGTGGAATGGAATGTGAAGGACTTGAGACGTTATGCATTAAGGATCAGACGCTTACAAATGAAAATGCAGAGAAGATAATTGGTTGGGCTTTAAGTCACCACCTCATGCAGAATTCAGAAGCTAAGCCTGATTCGAAGCTTGTATTGTCATGTGAGAGCATTCAGTATGGAATTGGGATCTTGCAGTCCGTCCAGAATGAGTCCAAGAGCCTGAAGAAATCTCTTAAGGATGTTGTAACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGACGTTATTCCTCCTAGTGACATTGATGTTACCTTTGATGATATTGGAGCTCTTGAAAAGGTCAAGGATACATTGAAAGAGTTGGTGATGCTTCCTTTACAGCGACCTGAGCTTTTTTGCAAGGGGCAATTAACCAAGCCATGCAAAGGTATCCTATTATTTGGTCCTCCTGGAACGGGTAAAACAATGCTCGCAAAAGCAATTGCTACTGAAGCTGGTGCAAACTTCATTAACATTTCTATGTCAAGTATTACATCTAAGTGGTTTGGTGAGGGTGAGAAATATGTGAAAGCTGTTTTCTCTTTGGCGAGTAAAATTTCTCCAAGTGTTATATTTGTTGATGAGGTTGACAGCATGCTGGGTCGGAGGGAAAACCCAGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTAAATTGGGATGGCTTACGTACGAAGGAAACAGAGAGAGTTCTTGTGCTGGCAGCCACTAACAGGCCTTTTGACCTAGATGAAGCTGTTATAAGGAGAATGCCAAGAAGATTGATGGTAAATTTGCCAGATGCTCCTAATAGAGCAAAAATATTGAAAGTCATACTGGCCAAAGAGGAGTTGTCTCCTGATGTTGATTTGGATGCAGTTGCTACTATGACCGATGGATACTCTGGAAGTGATCTTAAGAATTTATGTGTTACGGCAGCACACCGGCCTATTAAAGAGATATTAGAAAAAGAAAAAAAGGACCGCGTTGCTGCACTAGCAGAAGGTCAACCGGCTCCAGCGTTATGTAGCAGTGGGGACATCAGATCATTAAACATGGAGGACTTCAAATATGCTCATCAACAGGTTTGTGCGAGTGTTTCTTCTGAATCAGTAAACATGACTGAGCTTTTACAATGGAATGAACTATATGGAGAAGGGGGTTCAAGAGTAAAGAAAGCACTCAGCTATTTCATGTGA 3681 0.4322 MVSTRRSGSLSANNSKRSSSSESKPPSPKRQKVDNGGSSEKPVPTPAENSKDLRTSEPVPDPGECGSADVQIAGAGSADGVSSGKVDATPAVPVTAPIADAACPSFSSWSVYQKQIPNIEGGPWCRFLSQSAQNPNVAVCIPNFTIGSNRSCNFALKDQTISGNLCKIKLTQRDGSVVAVLESTGSKGSVLVNGTHVKKNSSCVLNSGDEVVFGVLGNHSYIFQQLNTEVALRGAEVPSGVGKYLQLERKSGDPSAVAGASILASLSIKQDLTRWKSPTHTSSKPHPGTDVSSHPIHDSTEIELDASESTPNVHTDKAEDAQTNEKNSTMDCNPDAGAEAGNVKLSGVNDFLRPFFRILARPSCKLKLSKSICKQVLEEKNGTLDMQAASTLGTSVRSAVFKEDVHAAILDGKEIDVSFDNFPYYLSESTKNVLVAACYMHLRHKEHEKFTTDLTTINPRILLSGPAGSEIYQEMLAKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKDGLNAEKSLSSTKQSPTATKMAGSVDPPATETETPSSSNAPSLAFDSQPKLETDNMPSTSGTAKSCLFKLGDRVKFSCSSSCGVYQTSSRGPSNGGRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLESSAVEELDKLLIHSLFEVVFSESRNAPFILFMKDAEKSIVGNGDSYAFKSKLESLPNNVVVIGSHTQNDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNRTLTKLFPNKIIIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRAVLGRCGMECEGLETLCIKDQTLTNENAEKIIGWALSHHLMQNSEAKPDSKLVLSCESIQYGIGILQSVQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIDVTFDDIGALEKVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKETERVLVLAATNRPFDLDEAVIRRMPRRLMVNLPDAPNRAKILKVILAKEELSPDVDLDAVATMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKDRVAALAEGQPAPALCSSGDIRSLNMEDFKYAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3866g00009 1226 MobiDBLite consensus disorder prediction 274 295 - -
Vium3866g00009 1226 MobiDBLite consensus disorder prediction 538 570 - -
Vium3866g00009 1226 MobiDBLite consensus disorder prediction 1 86 - -
Vium3866g00009 1226 MobiDBLite consensus disorder prediction 274 335 - -
Vium3866g00009 1226 CDD RecA-like_ATAD1 925 1091 - -
Vium3866g00009 1226 CDD FHA 144 224 - -
Vium3866g00009 1226 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 401 1225 - -
Vium3866g00009 1226 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 920 1096 - -
Vium3866g00009 1226 MobiDBLite consensus disorder prediction 296 324 - -
Vium3866g00009 1226 Pfam FHA domain 145 214 IPR000253 GO:0005515
Vium3866g00009 1226 ProSiteProfiles Forkhead-associated (FHA) domain profile. 144 197 IPR000253 GO:0005515
Vium3866g00009 1226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 920 1200 IPR027417 -
Vium3866g00009 1226 ProSitePatterns AAA-protein family signature. 1065 1084 IPR003960 GO:0005524|GO:0016887
Vium3866g00009 1226 Gene3D - 920 1201 IPR027417 -
Vium3866g00009 1226 Pfam ATPase family associated with various cellular activities (AAA) 962 1091 IPR003959 GO:0005524|GO:0016887
Vium3866g00009 1226 MobiDBLite consensus disorder prediction 1 26 - -
Vium3866g00009 1226 Gene3D - 123 231 - -
Vium3866g00009 1226 SMART AAA_5 958 1095 IPR003593 GO:0016887
Vium3866g00009 1226 Gene3D - 1094 1188 - -
Vium3866g00009 1226 SUPERFAMILY SMAD/FHA domain 113 224 IPR008984 GO:0005515
Vium3866g00009 1226 Coils Coil 882 902 - -
Vium3866g00009 1226 MobiDBLite consensus disorder prediction 517 570 - -
Vium3866g00009 1226 Pfam AAA+ lid domain 1115 1150 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3866g00009 Vium-Chr3866 21367 35412 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3866g00009 921 1169 Calmodulin-binding Proteins AT3G56690 39.062 7.01e-41 162