Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3866g00008 ATGGTTTCGACGAGACGGAGTGGATCTCTCTCTGCCAACAACTCCAAACGATCTTCCTCATCGGAAAGCAAACCTCCTTCGCCGAAGCGTCAGAAGGTCGACAATGGTGGTTCGTCGGAGAAACCGGTGCCGACACCGGCGGAGAATTCGAAGGATTTACGTACTTCGGAGCCCGTGCCTGATCCTGGGGAATGTGGCTCTGCCGACGTTCAGATCGCCGGAGCCGGTTCCGCCGATGGAGTGAGCTCCGGCAAAGTCGACGCTACGCCGGCTGTGCCTGTCACGGCACCGATTGCTGATGCCGCATGTCCGTCCTTCTCTTCGTGGAGTGTGTATCAGAAACAGATTCCGAATATCGAGGGAGGACCGTGGTGCAGGTTTTTGTCTCAGTCTGCACAGAATCCTAATGTTGCTGTTTGCATACCCAATTTCACGATTGGTTCTAATAGAAGTTGCAACTTTGCACTAAAGGATCAGACTATAAGTGGAAATTTATGCAAGATCAAGCTCACGCAGCGCGATGGAAGTGTTGTAGCTGTGTTAGAAAGTACGGGTAGCAAAGGATCTGTGCTAGTAAATGGAACGCATGTCAAGAAGAATAGCAGCTGTGTGCTTAACTCGGGTGATGAAGTTGTTTTTGGTGTTCTTGGAAATCATTCTTATATTTTCCAGCAACTTAATACCGAGGTTGCATTAAGGGGTGCGGAAGTTCCAAGTGGTGTTGGGAAATATCTGCAGCTTGAAAGGAAAAGTGGAGACCCTTCAGCTGTGGCCGGGGCCTCTATTTTGGCTTCTCTTTCCATCAAACAGGACCTTACAAGATGGAAATCTCCAACTCATACCTCTAGTAAACCTCACCCGGGTACTGACGTCTCTAGTCATCCTATTCATGATAGTACAGAAATTGAGCTTGATGCCTCAGAGTCAACTCCAAATGTGCATACTGATAAAGCAGAAGATGCTCAAACAAATGAGAAGAATTCAACAATGGATTGCAATCCGGATGCTGGTGCAGAGGCAGGCAATGTATTGGAAGAAAAAAATGGGACGCTGGACATGCAGGCTGCATCAACTTTGGGTACATCTGTACGCTCAGCTGTGTTTAAAGAAGATGTTCATGCTGCTATATTGGATGGGAAAGAAATAGATGTTTCTTTTGACAACTTCCCTTACTATTTAAGTGAGAGCACAAAAAATGTCTTGGTGGCTGCTTGCTATATGCACCTAAGGCATAAAGAACATGAAAAGTTTACTACAGATCTTACAACCATAAACCCTCGTATTCTCCTCTCAGGACCTGCAGGGTCAGAAATATATCAAGAGATGTTGGCAAAGGCACTTGCAAAATACTTTGGAGCTAAGCTGCTAATATTTGATAGTCATTTGCTTTTGGGTGGTTTATCTTCCAAGGAAGCTGAGCTACTCAAAGATGGATTAAATGCTGAAAAATCTCTCAGCAGCACTAAGCAAAGTCCTACAGCAACAAAAATGGCTGGGAGCGTGGATCCACCTGCTACTGAAACAGAGACACCTAGCTCTTCAAATGCACCTTCACTGGCCTTTGACTCTCAACCTAAGTTGGAAACTGATAACATGCCATCCACCTCTGGGACAGCCAAAAGTTGCTTGTTCAAATTAGGTGATAGGGTGAAATTTAGCTGTTCATCTTCTTGTGGAGTATATCAAACATCTTCAAGGGGGCCATCTAATGGAGGTCGGGGGAAGGTTGTCTTACTATTTGATGATAATCCCTTGTCTAAAATTGGTGTGAGATTTGATAAACCCATACCTGATGGAGTTGATCTTGGTGGTGCCTGTGAGGGAGGTCAAGGTTTTTTCTGCAATGTCACCGATCTTCGCTTGGAAAGTAGCGCTGTAGAAGAACTGGACAAATTACTTATTCATTCGCTGTTTGAGGTTGTTTTTAGTGAAAGTAGAAATGCACCATTCATTTTGTTCATGAAAGATGCTGAGAAGTCTATTGTAGGAAATGGAGACTCATATGCATTTAAAAGTAAGCTTGAAAGTCTTCCAAACAATGTGGTCGTAATAGGTTCTCACACTCAAAATGACAGTCGTAAGGAAAAGTCACATCCTGGTGGTTTGCTTTTTACAAAATTTGGTAGCAATCAGACTGCCCTTCTTGACCTGGCTTTCCCTGATAGTTTTGGACGATTGCATGACAGAGGGAAGGAGGTTCCAAAGCCAAATAGAACTTTGACTAAGCTCTTCCCAAATAAAATTATAATTCACATGCCTCAGGATGAGGCTCTTCTAGCATCTTGGAAGCAGCAACTGGATCGAGACGTTGAAACTCTCAAAATCAAAGGGAATTTACATCACTTGCGTGCAGTTTTGGGACGTTGTGGAATGGAATGTGAAGGACTTGAGACGTTATGCATTAAGGATCAGACGCTTACAAATGAAAATGCAGAGAAGATAATTGGTTGGGCTTTAAGTCACCACCTCATGCAGAATTCAGAAGCTAAGCCTGATTCGAAGCTTGTATTGTCATGTGAGAGCATTCAGTATGGAATTGGGATCTTGCAGTCCGTCCAGAATGAGTCCAAGAGCCTGAAGAAATCTCTTAAGGATGTTGTAACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGACGTTATTCCTCCTAGTGACATTGATGTTACCTTTGATGATATTGGAGCTCTTGAAAAGGTCAAGGATACATTGAAAGAGTTGGTGATGCTTCCTTTACAGCGACCTGAGCTTTTTTGCAAGGGGCAATTAACCAAGCCATGCAAAGGTATCCTATTATTTGGTCCTCCTGGAACGGGTAAAACAATGCTCGCAAAAGCAATTGCTACTGAAGCTGGTGCAAACTTCATTAACATTTCTATGTCAAGTATTACATCTAAGTGGTTTGGTGAGGGTGAGAAATATGTGAAAGCTGTTTTCTCTTTGGCGAGTAAAATTTCTCCAAGTGTTATATTTGTTGATGAGGTTGACAGCATGCTGGGTCGGAGGGAAAACCCAGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTAAATTGGGATGGCTTACGTACGAAGGAAACAGAGAGAGTTCTTGTGCTGGCAGCCACTAACAGGCCTTTTGACCTAGATGAAGCTGTTATAAGGAGAATGCCAAGAAGATTGATGGTAAATTTGCCAGATGCTCCTAATAGAGCAAAAATATTGAAAGTCATACTGGCCAAAGAGGAGTTGTCTCCTGATGTTGATTTGGATGCAGTTGCTACTATGACCGATGGATACTCTGGAAGTGATCTTAAGAATTTATGTGTTACGGCAGCACACCGGCCTATTAAAGAGATATTAGAAAAAGAAAAAAAGGACCGCGTTGCTGCACTAGCAGAAGGTCAACCGGCTCCAGCGTTATGTAGCAGTGGGGACATCAGATCATTAAACATGGAGGACTTCAAATATGCTCATCAACAGGTTTGTGCGAGTGTTTCTTCTGAATCAGTAAACATGACTGAGCTTTTACAATGGAATGAACTATATGGAGAAGGGGGTTCAAGAGTAAAGAAAGCACTCAGCTATTTCATGTGA 3582 0.4336 MVSTRRSGSLSANNSKRSSSSESKPPSPKRQKVDNGGSSEKPVPTPAENSKDLRTSEPVPDPGECGSADVQIAGAGSADGVSSGKVDATPAVPVTAPIADAACPSFSSWSVYQKQIPNIEGGPWCRFLSQSAQNPNVAVCIPNFTIGSNRSCNFALKDQTISGNLCKIKLTQRDGSVVAVLESTGSKGSVLVNGTHVKKNSSCVLNSGDEVVFGVLGNHSYIFQQLNTEVALRGAEVPSGVGKYLQLERKSGDPSAVAGASILASLSIKQDLTRWKSPTHTSSKPHPGTDVSSHPIHDSTEIELDASESTPNVHTDKAEDAQTNEKNSTMDCNPDAGAEAGNVLEEKNGTLDMQAASTLGTSVRSAVFKEDVHAAILDGKEIDVSFDNFPYYLSESTKNVLVAACYMHLRHKEHEKFTTDLTTINPRILLSGPAGSEIYQEMLAKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKDGLNAEKSLSSTKQSPTATKMAGSVDPPATETETPSSSNAPSLAFDSQPKLETDNMPSTSGTAKSCLFKLGDRVKFSCSSSCGVYQTSSRGPSNGGRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLESSAVEELDKLLIHSLFEVVFSESRNAPFILFMKDAEKSIVGNGDSYAFKSKLESLPNNVVVIGSHTQNDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNRTLTKLFPNKIIIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRAVLGRCGMECEGLETLCIKDQTLTNENAEKIIGWALSHHLMQNSEAKPDSKLVLSCESIQYGIGILQSVQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIDVTFDDIGALEKVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKETERVLVLAATNRPFDLDEAVIRRMPRRLMVNLPDAPNRAKILKVILAKEELSPDVDLDAVATMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKDRVAALAEGQPAPALCSSGDIRSLNMEDFKYAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3866g00008 1193 MobiDBLite consensus disorder prediction 274 295 - -
Vium3866g00008 1193 Coils Coil 849 869 - -
Vium3866g00008 1193 SMART AAA_5 925 1062 IPR003593 GO:0016887
Vium3866g00008 1193 MobiDBLite consensus disorder prediction 1 86 - -
Vium3866g00008 1193 MobiDBLite consensus disorder prediction 484 537 - -
Vium3866g00008 1193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 887 1167 IPR027417 -
Vium3866g00008 1193 Gene3D - 123 231 - -
Vium3866g00008 1193 Gene3D - 1061 1155 - -
Vium3866g00008 1193 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 368 1192 - -
Vium3866g00008 1193 CDD FHA 144 224 - -
Vium3866g00008 1193 Pfam FHA domain 145 214 IPR000253 GO:0005515
Vium3866g00008 1193 ProSitePatterns AAA-protein family signature. 1032 1051 IPR003960 GO:0005524|GO:0016887
Vium3866g00008 1193 MobiDBLite consensus disorder prediction 296 324 - -
Vium3866g00008 1193 ProSiteProfiles Forkhead-associated (FHA) domain profile. 144 197 IPR000253 GO:0005515
Vium3866g00008 1193 MobiDBLite consensus disorder prediction 505 537 - -
Vium3866g00008 1193 Pfam AAA+ lid domain 1082 1117 IPR041569 -
Vium3866g00008 1193 MobiDBLite consensus disorder prediction 1 26 - -
Vium3866g00008 1193 CDD RecA-like_ATAD1 892 1058 - -
Vium3866g00008 1193 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 887 1063 - -
Vium3866g00008 1193 SUPERFAMILY SMAD/FHA domain 113 224 IPR008984 GO:0005515
Vium3866g00008 1193 Pfam ATPase family associated with various cellular activities (AAA) 929 1058 IPR003959 GO:0005524|GO:0016887
Vium3866g00008 1193 Gene3D - 887 1168 IPR027417 -
Vium3866g00008 1193 MobiDBLite consensus disorder prediction 274 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3866g00008 Vium-Chr3866 21367 35412 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3866g00008 888 1136 Calmodulin-binding Proteins AT3G56690 39.062 6.64e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3866g00008 - - gmx:100816731 2093.93