Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3866g00007 ATGGTTTCGACGAGACGGAGTGGATCTCTCTCTGCCAACAACTCCAAACGATCTTCCTCATCGGAAAGCAAACCTCCTTCGCCGAAGCGTCAGAAGGTCGACAATGGTGGTTCGTCGGAGAAACCGGTGCCGACACCGGCGGAGAATTCGAAGGATTTACGTACTTCGGAGCCCGTGCCTGATCCTGGGGAATGTGGCTCTGCCGACGTTCAGATCGCCGGAGCCGGTTCCGCCGATGGAGTGAGCTCCGGCAAAGTCGACGCTACGCCGGCTGTGCCTGTCACGGCACCGATTGCTGATGCCGCATGTCCGTCCTTCTCTTCGTGGAGTGTGTATCAGAAACAGATTCCGAATATCGAGGGAGGACCGTGGTGCAGGTTTTTGTCTCAGTCTGCACAGAATCCTAATGTTGCTGTTTGCATACCCAATTTCACGATTGGTTCTAATAGAAGTTGCAACTTTGCACTAAAGGATCAGACTATAAGTGGAAATTTATGCAAGATCAAGCTCACGCAGCGCGATGGAAGTGTTGTAGCTGTGTTAGAAAGTACGGGTAGCAAAGGATCTGTGCTAGTAAATGGAACGCATGTCAAGAAGAATAGCAGCTGTGTGCTTAACTCGGGTGATGAAGTTGTTTTTGGTGTTCTTGGAAATCATTCTTATATTTTCCAGCAACTTAATACCGAGGTTGCATTAAGGGGTGCGGAAGTTCCAAGTGGTGTTGGGAAATATCTGCAGCTTGAAAGGAAAAGTGGAGACCCTTCAGCTGTGGCCGGGGCCTCTATTTTGGCTTCTCTTTCCATCAAACAGGACCTTACAAGATGGAAATCTCCAACTCATACCTCTAGTAAACCTCACCCGGAAGATGCTCAAACAAATGAGAAGAATTCAACAATGGATTGCAATCCGGATGCTGGTGCAGAGGCAGGCAATGTATTGGAAGAAAAAAATGGGACGCTGGACATGCAGGCTGCATCAACTTTGGGTACATCTGTACGCTCAGCTGTGTTTAAAGAAGATGTTCATGCTGCTATATTGGATGGGAAAGAAATAGATGTTTCTTTTGACAACTTCCCTTACTATTTAAGTGAGAGCACAAAAAATGTCTTGGTGGCTGCTTGCTATATGCACCTAAGGCATAAAGAACATGAAAAGTTTACTACAGATCTTACAACCATAAACCCTCGTATTCTCCTCTCAGGACCTGCAGGGTCAGAAATATATCAAGAGATGTTGGCAAAGGCACTTGCAAAATACTTTGGAGCTAAGCTGCTAATATTTGATAGTCATTTGCTTTTGGGTGGTTTATCTTCCAAGGAAGCTGAGCTACTCAAAGATGGATTAAATGCTGAAAAATCTCTCAGCAGCACTAAGCAAAGTCCTACAGCAACAAAAATGGCTGGGAGCGTGGATCCACCTGCTACTGAAACAGAGACACCTAGCTCTTCAAATGCACCTTCACTGGCCTTTGACTCTCAACCTAAGTTGGAAACTGATAACATGCCATCCACCTCTGGGACAGCCAAAAGTTGCTTGTTCAAATTAGGTGATAGGGTGAAATTTAGCTGTTCATCTTCTTGTGGAGTATATCAAACATCTTCAAGGGGGCCATCTAATGGAGGTCGGGGGAAGGTTGTCTTACTATTTGATGATAATCCCTTGTCTAAAATTGGTGTGAGATTTGATAAACCCATACCTGATGGAGTTGATCTTGGTGGTGCCTGTGAGGGAGGTCAAGGTTTTTTCTGCAATGTCACCGATCTTCGCTTGGAAAGTAGCGCTGTAGAAGAACTGGACAAATTACTTATTCATTCGCTGTTTGAGGTTGTTTTTAGTGAAAGTAGAAATGCACCATTCATTTTGTTCATGAAAGATGCTGAGAAGTCTATTGTAGGAAATGGAGACTCATATGCATTTAAAAGTAAGCTTGAAAGTCTTCCAAACAATGTGGTCGTAATAGGTTCTCACACTCAAAATGACAGTCGTAAGGAAAAGTCACATCCTGGTGGTTTGCTTTTTACAAAATTTGGTAGCAATCAGACTGCCCTTCTTGACCTGGCTTTCCCTGATAGTTTTGGACGATTGCATGACAGAGGGAAGGAGGTTCCAAAGCCAAATAGAACTTTGACTAAGCTCTTCCCAAATAAAATTATAATTCACATGCCTCAGGATGAGGCTCTTCTAGCATCTTGGAAGCAGCAACTGGATCGAGACGTTGAAACTCTCAAAATCAAAGGGAATTTACATCACTTGCGTGCAGTTTTGGGACGTTGTGGAATGGAATGTGAAGGACTTGAGACGTTATGCATTAAGGATCAGACGCTTACAAATGAAAATGCAGAGAAGATAATTGGTTGGGCTTTAAGTCACCACCTCATGCAGAATTCAGAAGCTAAGCCTGATTCGAAGCTTGTATTGTCATGTGAGAGCATTCAGTATGGAATTGGGATCTTGCAGTCCGTCCAGAATGAGTCCAAGAGCCTGAAGAAATCTCTTAAGGATGTTGTAACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGACGTTATTCCTCCTAGTGACATTGATGTTACCTTTGATGATATTGGAGCTCTTGAAAAGGTCAAGGATACATTGAAAGAGTTGGTGATGCTTCCTTTACAGCGACCTGAGCTTTTTTGCAAGGGGCAATTAACCAAGCCATGCAAAGGTATCCTATTATTTGGTCCTCCTGGAACGGGTAAAACAATGCTCGCAAAAGCAATTGCTACTGAAGCTGGTGCAAACTTCATTAACATTTCTATGTCAAGTATTACATCTAAGTGGTTTGGTGAGGGTGAGAAATATGTGAAAGCTGTTTTCTCTTTGGCGAGTAAAATTTCTCCAAGTGTTATATTTGTTGATGAGGTTGACAGCATGCTGGGTCGGAGGGAAAACCCAGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTAAATTGGGATGGCTTACGTACGAAGGAAACAGAGAGAGTTCTTGTGCTGGCAGCCACTAACAGGCCTTTTGACCTAGATGAAGCTGTTATAAGGAGAATGCCAAGAAGATTGATGGTAAATTTGCCAGATGCTCCTAATAGAGCAAAAATATTGAAAGTCATACTGGCCAAAGAGGAGTTGTCTCCTGATGTTGATTTGGATGCAGTTGCTACTATGACCGATGGATACTCTGGAAGTGATCTTAAGAATTTATGTGTTACGGCAGCACACCGGCCTATTAAAGAGATATTAGAAAAAGAAAAAAAGGACCGCGTTGCTGCACTAGCAGAAGGTCAACCGGCTCCAGCGTTATGTAGCAGTGGGGACATCAGATCATTAAACATGGAGGACTTCAAATATGCTCATCAACAGGTTTGTGCGAGTGTTTCTTCTGAATCAGTAAACATGACTGAGCTTTTACAATGGAATGAACTATATGGAGAAGGGGGTTCAAGAGTAAAGAAAGCACTCAGCTATTTCATGTGA 3489 0.4342 MVSTRRSGSLSANNSKRSSSSESKPPSPKRQKVDNGGSSEKPVPTPAENSKDLRTSEPVPDPGECGSADVQIAGAGSADGVSSGKVDATPAVPVTAPIADAACPSFSSWSVYQKQIPNIEGGPWCRFLSQSAQNPNVAVCIPNFTIGSNRSCNFALKDQTISGNLCKIKLTQRDGSVVAVLESTGSKGSVLVNGTHVKKNSSCVLNSGDEVVFGVLGNHSYIFQQLNTEVALRGAEVPSGVGKYLQLERKSGDPSAVAGASILASLSIKQDLTRWKSPTHTSSKPHPEDAQTNEKNSTMDCNPDAGAEAGNVLEEKNGTLDMQAASTLGTSVRSAVFKEDVHAAILDGKEIDVSFDNFPYYLSESTKNVLVAACYMHLRHKEHEKFTTDLTTINPRILLSGPAGSEIYQEMLAKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKDGLNAEKSLSSTKQSPTATKMAGSVDPPATETETPSSSNAPSLAFDSQPKLETDNMPSTSGTAKSCLFKLGDRVKFSCSSSCGVYQTSSRGPSNGGRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLESSAVEELDKLLIHSLFEVVFSESRNAPFILFMKDAEKSIVGNGDSYAFKSKLESLPNNVVVIGSHTQNDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNRTLTKLFPNKIIIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRAVLGRCGMECEGLETLCIKDQTLTNENAEKIIGWALSHHLMQNSEAKPDSKLVLSCESIQYGIGILQSVQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIDVTFDDIGALEKVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKETERVLVLAATNRPFDLDEAVIRRMPRRLMVNLPDAPNRAKILKVILAKEELSPDVDLDAVATMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKDRVAALAEGQPAPALCSSGDIRSLNMEDFKYAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 1162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3866g00007 1162 Gene3D - 856 1137 IPR027417 -
Vium3866g00007 1162 MobiDBLite consensus disorder prediction 1 86 - -
Vium3866g00007 1162 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 337 1161 - -
Vium3866g00007 1162 MobiDBLite consensus disorder prediction 474 506 - -
Vium3866g00007 1162 MobiDBLite consensus disorder prediction 274 308 - -
Vium3866g00007 1162 CDD FHA 144 224 - -
Vium3866g00007 1162 Pfam ATPase family associated with various cellular activities (AAA) 898 1027 IPR003959 GO:0005524|GO:0016887
Vium3866g00007 1162 ProSiteProfiles Forkhead-associated (FHA) domain profile. 144 197 IPR000253 GO:0005515
Vium3866g00007 1162 CDD RecA-like_ATAD1 861 1027 - -
Vium3866g00007 1162 MobiDBLite consensus disorder prediction 453 506 - -
Vium3866g00007 1162 MobiDBLite consensus disorder prediction 1 26 - -
Vium3866g00007 1162 SMART AAA_5 894 1031 IPR003593 GO:0016887
Vium3866g00007 1162 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 856 1032 - -
Vium3866g00007 1162 ProSitePatterns AAA-protein family signature. 1001 1020 IPR003960 GO:0005524|GO:0016887
Vium3866g00007 1162 Coils Coil 818 838 - -
Vium3866g00007 1162 Pfam FHA domain 145 214 IPR000253 GO:0005515
Vium3866g00007 1162 SUPERFAMILY SMAD/FHA domain 113 224 IPR008984 GO:0005515
Vium3866g00007 1162 Gene3D - 1030 1124 - -
Vium3866g00007 1162 Pfam AAA+ lid domain 1051 1086 IPR041569 -
Vium3866g00007 1162 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 856 1136 IPR027417 -
Vium3866g00007 1162 Gene3D - 123 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3866g00007 Vium-Chr3866 21367 35412 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3866g00007 857 1105 Calmodulin-binding Proteins AT3G56690 39.062 6.50e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3866g00007 - - gmx:100816731 2036.15