Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3866g00006 ATGGTTTCGACGAGACGGAGTGGATCTCTCTCTGCCAACAACTCCAAACGATCTTCCTCATCGGAAAGCAAACCTCCTTCGCCGAAGCGTCAGAAGGTCGACAATGGTGGTTCGTCGGAGAAACCGGTGCCGACACCGGCGGAGAATTCGAAGGATTTACGTACTTCGGAGCCCGTGCCTGATCCTGGGGAATGTGGCTCTGCCGACGTTCAGATCGCCGGAGCCGGTTCCGCCGATGGAGTGAGCTCCGGCAAAGTCGACGCTACGCCGGCTGTGCCTGTCACGGCACCGATTGCTGATGCCGCATGTCCGTCCTTCTCTTCGTGGAGTGTGTATCAGAAACAGATTCCGAATATCGAGGGAGGACCGTGGTGCAGGTTTTTGTCTCAGTCTGCACAGAATCCTAATGTTGCTGTTTGCATACCCAATTTCACGATTGGTTCTAATAGAAGTTGCAACTTTGCACTAAAGGATCAGACTATAAGTGGAAATTTATGCAAGATCAAGCTCACGCAGCGCGATGGAAGTGTTGTAGCTGTGTTAGAAAGTACGGGTAGCAAAGGATCTGTGCTAGTAAATGGAACGCATGTCAAGAAGAATAGCAGCTGTGTGCTTAACTCGGGTGATGAAGTTGTTTTTGGTGTTCTTGGAAATCATTCTTATATTTTCCAGCAACTTAATACCGAGGTTGCATTAAGGGGTGCGGAAGTTCCAAGTGGTGTTGGGAAATATCTGCAGCTTGAAAGGAAAAGTGGAGACCCTTCAGCTGTGGCCGGGGCCTCTATTTTGGCTTCTCTTTCCATCAAACAGGACCTTACAAGATGGAAATCTCCAACTCATACCTCTAGTAAACCTCACCCGGAAGATGCTCAAACAAATGAGAAGAATTCAACAATGGATTGCAATCCGGATGCTGGTGCAGAGGCAGGCAATGTAAAACTCTCTGGGGTTAATGATTTCCTAAGGCCTTTCTTCAGGATCTTAGCTCGACCTAGTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTATTGGAAGAAAAAAATGGGACGCTGGACATGCAGGCTGCATCAACTTTGGGTACATCTGTACGCTCAGCTGTGTTTAAAGAAGATGTTCATGCTGCTATATTGGATGGGAAAGAAATAGATGTTTCTTTTGACAACTTCCCTTACTATTTAAGTGAGAGCACAAAAAATGTCTTGGTGGCTGCTTGCTATATGCACCTAAGGCATAAAGAACATGAAAAGTTTACTACAGATCTTACAACCATAAACCCTCGTATTCTCCTCTCAGGACCTGCAGGGTCAGAAATATATCAAGAGATGTTGGCAAAGGCACTTGCAAAATACTTTGGAGCTAAGCTGCTAATATTTGATAGTCATTTGCTTTTGGGTGGTTTATCTTCCAAGGAAGCTGAGCTACTCAAAGATGGATTAAATGCTGAAAAATCTCTCAGCAGCACTAAGCAAAGTCCTACAGCAACAAAAATGGCTGGGAGCGTGGATCCACCTGCTACTGAAACAGAGACACCTAGCTCTTCAAATGCACCTTCACTGGCCTTTGACTCTCAACCTAAGTTGGAAACTGATAACATGCCATCCACCTCTGGGACAGCCAAAAGTTGCTTGTTCAAATTAGGTGATAGGGTGAAATTTAGCTGTTCATCTTCTTGTGGAGTATATCAAACATCTTCAAGGGGGCCATCTAATGGAGGTCGGGGGAAGGTTGTCTTACTATTTGATGATAATCCCTTGTCTAAAATTGGTGTGAGATTTGATAAACCCATACCTGATGGAGTTGATCTTGGTGGTGCCTGTGAGGGAGGTCAAGGTTTTTTCTGCAATGTCACCGATCTTCGCTTGGAAAGTAGCGCTGTAGAAGAACTGGACAAATTACTTATTCATTCGCTGTTTGAGGTTGTTTTTAGTGAAAGTAGAAATGCACCATTCATTTTGTTCATGAAAGATGCTGAGAAGTCTATTGTAGGAAATGGAGACTCATATGCATTTAAAAGTAAGCTTGAAAGTCTTCCAAACAATGTGGTCGTAATAGGTTCTCACACTCAAAATGACAGTCGTAAGGAAAAGTCACATCCTGGTGGTTTGCTTTTTACAAAATTTGGTAGCAATCAGACTGCCCTTCTTGACCTGGCTTTCCCTGATAGTTTTGGACGATTGCATGACAGAGGGAAGGAGGTTCCAAAGCCAAATAGAACTTTGACTAAGCTCTTCCCAAATAAAATTATAATTCACATGCCTCAGGATGAGGCTCTTCTAGCATCTTGGAAGCAGCAACTGGATCGAGACGTTGAAACTCTCAAAATCAAAGGGAATTTACATCACTTGCGTGCAGTTTTGGGACGTTGTGGAATGGAATGTGAAGGACTTGAGACGTTATGCATTAAGGATCAGACGCTTACAAATGAAAATGCAGAGAAGATAATTGGTTGGGCTTTAAGTCACCACCTCATGCAGAATTCAGAAGCTAAGCCTGATTCGAAGCTTGTATTGTCATGTGAGAGCATTCAGTATGGAATTGGGATCTTGCAGTCCGTCCAGAATGAGTCCAAGAGCCTGAAGAAATCTCTTAAGGATGTTGTAACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGACGTTATTCCTCCTAGTGACATTGATGTTACCTTTGATGATATTGGAGCTCTTGAAAAGGTCAAGGATACATTGAAAGAGTTGGTGATGCTTCCTTTACAGCGACCTGAGCTTTTTTGCAAGGGGCAATTAACCAAGCCATGCAAAGGTATCCTATTATTTGGTCCTCCTGGAACGGGTAAAACAATGCTCGCAAAAGCAATTGCTACTGAAGCTGGTGCAAACTTCATTAACATTTCTATGTCAAGTATTACATCTAAGTGGTTTGGTGAGGGTGAGAAATATGTGAAAGCTGTTTTCTCTTTGGCGAGTAAAATTTCTCCAAGTGTTATATTTGTTGATGAGGTTGACAGCATGCTGGGTCGGAGGGAAAACCCAGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTAAATTGGGATGGCTTACGTACGAAGGAAACAGAGAGAGTTCTTGTGCTGGCAGCCACTAACAGGCCTTTTGACCTAGATGAAGCTGTTATAAGGAGAATGCCAAGAAGATTGATGGTAAATTTGCCAGATGCTCCTAATAGAGCAAAAATATTGAAAGTCATACTGGCCAAAGAGGAGTTGTCTCCTGATGTTGATTTGGATGCAGTTGCTACTATGACCGATGGATACTCTGGAAGTGATCTTAAGAATTTATGTGTTACGGCAGCACACCGGCCTATTAAAGAGATATTAGAAAAAGAAAAAAAGGACCGCGTTGCTGCACTAGCAGAAGGTCAACCGGCTCCAGCGTTATGTAGCAGTGGGGACATCAGATCATTAAACATGGAGGACTTCAAATATGCTCATCAACAGGTTTGTGCGAGTGTTTCTTCTGAATCAGTAAACATGACTGAGCTTTTACAATGGAATGAACTATATGGAGAAGGGGGTTCAAGAGTAAAGAAAGCACTCAGCTATTTCATGTGA 3588 0.4328 MVSTRRSGSLSANNSKRSSSSESKPPSPKRQKVDNGGSSEKPVPTPAENSKDLRTSEPVPDPGECGSADVQIAGAGSADGVSSGKVDATPAVPVTAPIADAACPSFSSWSVYQKQIPNIEGGPWCRFLSQSAQNPNVAVCIPNFTIGSNRSCNFALKDQTISGNLCKIKLTQRDGSVVAVLESTGSKGSVLVNGTHVKKNSSCVLNSGDEVVFGVLGNHSYIFQQLNTEVALRGAEVPSGVGKYLQLERKSGDPSAVAGASILASLSIKQDLTRWKSPTHTSSKPHPEDAQTNEKNSTMDCNPDAGAEAGNVKLSGVNDFLRPFFRILARPSCKLKLSKSICKQVLEEKNGTLDMQAASTLGTSVRSAVFKEDVHAAILDGKEIDVSFDNFPYYLSESTKNVLVAACYMHLRHKEHEKFTTDLTTINPRILLSGPAGSEIYQEMLAKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKDGLNAEKSLSSTKQSPTATKMAGSVDPPATETETPSSSNAPSLAFDSQPKLETDNMPSTSGTAKSCLFKLGDRVKFSCSSSCGVYQTSSRGPSNGGRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLESSAVEELDKLLIHSLFEVVFSESRNAPFILFMKDAEKSIVGNGDSYAFKSKLESLPNNVVVIGSHTQNDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNRTLTKLFPNKIIIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRAVLGRCGMECEGLETLCIKDQTLTNENAEKIIGWALSHHLMQNSEAKPDSKLVLSCESIQYGIGILQSVQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIDVTFDDIGALEKVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKETERVLVLAATNRPFDLDEAVIRRMPRRLMVNLPDAPNRAKILKVILAKEELSPDVDLDAVATMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKDRVAALAEGQPAPALCSSGDIRSLNMEDFKYAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM 1195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3866g00006 1195 CDD RecA-like_ATAD1 894 1060 - -
Vium3866g00006 1195 MobiDBLite consensus disorder prediction 1 86 - -
Vium3866g00006 1195 ProSitePatterns AAA-protein family signature. 1034 1053 IPR003960 GO:0005524|GO:0016887
Vium3866g00006 1195 Pfam ATPase family associated with various cellular activities (AAA) 931 1060 IPR003959 GO:0005524|GO:0016887
Vium3866g00006 1195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 889 1169 IPR027417 -
Vium3866g00006 1195 Gene3D - 1063 1157 - -
Vium3866g00006 1195 CDD FHA 144 224 - -
Vium3866g00006 1195 Gene3D - 123 231 - -
Vium3866g00006 1195 Pfam AAA+ lid domain 1084 1119 IPR041569 -
Vium3866g00006 1195 ProSiteProfiles Forkhead-associated (FHA) domain profile. 144 197 IPR000253 GO:0005515
Vium3866g00006 1195 Pfam FHA domain 145 214 IPR000253 GO:0005515
Vium3866g00006 1195 MobiDBLite consensus disorder prediction 1 26 - -
Vium3866g00006 1195 Coils Coil 851 871 - -
Vium3866g00006 1195 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 889 1065 - -
Vium3866g00006 1195 MobiDBLite consensus disorder prediction 274 304 - -
Vium3866g00006 1195 MobiDBLite consensus disorder prediction 486 539 - -
Vium3866g00006 1195 SMART AAA_5 927 1064 IPR003593 GO:0016887
Vium3866g00006 1195 SUPERFAMILY SMAD/FHA domain 113 224 IPR008984 GO:0005515
Vium3866g00006 1195 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 370 1194 - -
Vium3866g00006 1195 MobiDBLite consensus disorder prediction 507 539 - -
Vium3866g00006 1195 Gene3D - 889 1170 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3866g00006 Vium-Chr3866 21367 35413 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3866g00006 890 1138 Calmodulin-binding Proteins AT3G56690 39.062 7.02e-41 162