Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3866g00004 ATGAATGCATTTGACACAGAGCAACTAGTAGAAACCCTCGGTCAGCTCAAATCTGGACAGTCGGTTCAGATTCCAATATATGATTTCAAGCTTCATCAGAGATCTACCGACAAATCTCGACAGGTCAATGGATCTGATGTAATCATTATGGAGGGTATATTGGTTTTTCATGAACAACGTGTCCGCAACATGATGAATATGAAGATATTTGTTGATGCAGATCCAGACGTGAGGCTTGCCCGCAGAATAAAACGTGATACAGTTGAAAGGGGTAGAGATATACAATCGGTACTGGAACAGTATGCAAAATTTGTTAAGCCTGCCTATGAAGATTTTATTCTTCCATCCAAAAAATATGCTGACATCATAATACCTCGAGGGGGAGAGAATCGTGTAGCAATTGATTTGATTGTTCAACATATCCGCACTAAGCTTGGCCAGCATAACCTCTGCAAAATATATCCGAATTTGAATGTTATACAGTCTACTTTCCAGACTAGAGGCATGCACACTCTTATTCGTGATAGGGACATATCAAAGCATGATTTCATTTTTTATTCAGATCGGCTAATTCGATTGGTAGTGGAACATGGTCTTGGTTACTTGCCGTTTACAGAGAAACAAGTAATCACTCCTACAGGCTCAATTTATACTGGAGTTGATTTTTGTAAGAAATTGTGCGGAGTTTCCATTATTCGAAGTGGCGAGAGTATGGAAAATGCCTTTCGTGCTTGCTGTAAAGGAATAAAGATTGGAAAAATTCTCATTCATCGCGATGGTGATGAAACCCAGCTTATTTATGAGAAGCTTCCTAAAGATATTTCGGAGAGACATGTTCTTCTCATGGACCCAGTACTCGGTACAGGTAACACTGCCAGCGAAGCAGTCGAGCTTCTCATAAAGAAGGGAGTTCCAGAGTCCCAGATAATATTCCTTAACCTCATTTCTGCTCCTGAGGGCATACAATGTATTTGTAAACGTTTTCCGCATCTCAAAATTGTCACATCGGAGATCGAAGAAGGATTAAATGACCAGCTCCAGGTCATACCAGGGTTGGGTGAATTTGGAGACCGTTACTTTGGTACGGACGACTCATAG 1098 0.4071 MNAFDTEQLVETLGQLKSGQSVQIPIYDFKLHQRSTDKSRQVNGSDVIIMEGILVFHEQRVRNMMNMKIFVDADPDVRLARRIKRDTVERGRDIQSVLEQYAKFVKPAYEDFILPSKKYADIIIPRGGENRVAIDLIVQHIRTKLGQHNLCKIYPNLNVIQSTFQTRGMHTLIRDRDISKHDFIFYSDRLIRLVVEHGLGYLPFTEKQVITPTGSIYTGVDFCKKLCGVSIIRSGESMENAFRACCKGIKIGKILIHRDGDETQLIYEKLPKDISERHVLLMDPVLGTGNTASEAVELLIKKGVPESQIIFLNLISAPEGIQCICKRFPHLKIVTSEIEEGLNDQLQVIPGLGEFGDRYFGTDDS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3866g00004 365 PANTHER URIDINE KINASE 2 273 - -
Vium3866g00004 365 SUPERFAMILY PRTase-like 147 363 IPR029057 -
Vium3866g00004 365 FunFam Uridine kinase 1 147 - -
Vium3866g00004 365 CDD UMPK 2 144 IPR000764 -
Vium3866g00004 365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 137 IPR027417 -
Vium3866g00004 365 Gene3D - 148 362 IPR029057 -
Vium3866g00004 365 PRINTS Uridine kinase signature 90 101 - -
Vium3866g00004 365 PRINTS Uridine kinase signature 112 125 - -
Vium3866g00004 365 PRINTS Uridine kinase signature 76 86 - -
Vium3866g00004 365 PRINTS Uridine kinase signature 19 34 - -
Vium3866g00004 365 FunFam Uridine kinase 148 362 - -
Vium3866g00004 365 Pfam Phosphoribulokinase / Uridine kinase family 2 132 IPR006083 GO:0005524|GO:0016301
Vium3866g00004 365 CDD PRTases_typeI 221 335 IPR000836 -
Vium3866g00004 365 Gene3D - 1 147 IPR027417 -
Vium3866g00004 365 ProSiteProfiles UvrC family, homology region profile. 50 133 IPR001162 GO:0009381
Vium3866g00004 365 Pfam Uracil phosphoribosyltransferase 162 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3866g00004 Vium-Chr3866 5529 10384 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3866g00004 2 364 PRT Gene Family AT5G40870 80.769 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3866g00004 K00876 - gmx:100816209 669.463