LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium3866g00003	ATGGAAACCAAACGCATTCCAATGGATATGGTCATAGATGTTGTCTCCGGTGCGCACTTCTCCGGTTGGCAGCCTTCAACGACGTCGTCTTCTTCTCCAACTTCCTCTCATCAGCCCTTCATCATTGGTGTCGCTGGAGGCACTGCATCGGGGAAAACCACTGTGTGCGACATTATCATTCAGCAACTGCAAGATCACAGAGTTGTGCTCGTCTGTCAGGATTCATTCTATCGCGGTTTGACGAATGACGAGTTGAAACGCGTTCATGAGTATAACTTCGATCATCCTAATGCATTTGACACAGAGCAACTAGTAGAAACCCTCGGTCAGCTCAAATCTGGACAGTCGGTTCAGATTCCAATATATGATTTCAAGCTTCATCAGAGATCTACCGACAAATCTCGACAGGTCAATGGATCTGATGTAATCATTATGGAGGGTATATTGGTTTTTCATGAACAACGTGTCCGCAACATGATGAATATGAAGATATTTGTTGATGCAGATCCAGACGTGAGGCTTGCCCGCAGAATAAAACGTGATACAGTTGAAAGGGGTAGAGATATACAATCGTATGCAAAATTTGTTAAGCCTGCCTATGAAGATTTTATTCTTCCATCCAAAAAATATGCTGACATCATAATACCTCGAGGGGGAGAGAATCGTGTAGCAATTGATTTGATTGTTCAACATATCCGCACTAAGCTTGGCCAGCATAACCTCTGCAAAATATATCCGAATTTGAATGTTATACAGTCTACTTTCCAGACTAGAGGCATGCACACTCTTATTCGTGATAGGGACATATCAAAGCATGATTTCATTTTTTATTCAGATCGGCTAATTCGATTGGTAGTGGAACATGGTCTTGGTTACTTGCCGTTTACAGAGAAACAAGTAATCACTCCTACAGGCTCAATTTATACTGGAGTTGATTTTTGTAAGAAATTGTGCGGAGTTTCCATTATTCGAAGTGGCGAGAGTATGGAAAATGCCTTTCGTGCTTGCTGTAAAGGAATAAAGATTGGAAAAATTCTCATTCATCGCGATGGTGATGAAACCCAGCTTATTTATGAGAAGCTTCCTAAAGATATTTCGGAGAGACATGTTCTTCTCATGGACCCAGTACTCGGTACAGGTAACACTGCCAGCGAAGCAGTCGAGCTTCTCATAAAGAAGGGAGTTCCAGAGTCCCAGATAATATTCCTTAACCTCATTTCTGCTCCTGAGGGCATACAATGTATTTGTAAACGTTTTCCGCATCTCAAAATTGTCACATCGGAGATCGAAGAAGGATTAAATGACCAGCTCCAGGTCATACCAGGGTTGGGTGAATTTGGAGACCGTTACTTTGGTACGGACGACTCATAG	1371	0.423	METKRIPMDMVIDVVSGAHFSGWQPSTTSSSSPTSSHQPFIIGVAGGTASGKTTVCDIIIQQLQDHRVVLVCQDSFYRGLTNDELKRVHEYNFDHPNAFDTEQLVETLGQLKSGQSVQIPIYDFKLHQRSTDKSRQVNGSDVIIMEGILVFHEQRVRNMMNMKIFVDADPDVRLARRIKRDTVERGRDIQSYAKFVKPAYEDFILPSKKYADIIIPRGGENRVAIDLIVQHIRTKLGQHNLCKIYPNLNVIQSTFQTRGMHTLIRDRDISKHDFIFYSDRLIRLVVEHGLGYLPFTEKQVITPTGSIYTGVDFCKKLCGVSIIRSGESMENAFRACCKGIKIGKILIHRDGDETQLIYEKLPKDISERHVLLMDPVLGTGNTASEAVELLIKKGVPESQIIFLNLISAPEGIQCICKRFPHLKIVTSEIEEGLNDQLQVIPGLGEFGDRYFGTDDS	456

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium3866g00003	456	PRINTS	Uridine kinase signature	171	181	-	-
	Vium3866g00003	456	PRINTS	Uridine kinase signature	69	80	-	-
	Vium3866g00003	456	PRINTS	Uridine kinase signature	114	129	-	-
	Vium3866g00003	456	PRINTS	Uridine kinase signature	185	196	-	-
	Vium3866g00003	456	PRINTS	Uridine kinase signature	39	56	-	-
	Vium3866g00003	456	PANTHER	URIDINE KINASE	32	364	-	-
	Vium3866g00003	456	CDD	UMPK	41	235	IPR000764	-
	Vium3866g00003	456	Pfam	Phosphoribulokinase / Uridine kinase family	41	223	IPR006083	GO:0005524\|GO:0016301
	Vium3866g00003	456	Gene3D	-	35	238	IPR027417	-
	Vium3866g00003	456	Pfam	Uracil phosphoribosyltransferase	253	453	-	-
	Vium3866g00003	456	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	35	228	IPR027417	-
	Vium3866g00003	456	NCBIfam	uridine kinase	38	235	IPR000764	-
	Vium3866g00003	456	FunFam	Uridine kinase	239	453	-	-
	Vium3866g00003	456	Gene3D	-	239	453	IPR029057	-
	Vium3866g00003	456	ProSiteProfiles	UvrC family, homology region profile.	145	224	IPR001162	GO:0009381
	Vium3866g00003	456	SUPERFAMILY	PRTase-like	238	454	IPR029057	-
	Vium3866g00003	456	CDD	PRTases_typeI	312	426	IPR000836	-
	Vium3866g00003	456	FunFam	Uridine kinase	36	238	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium3866g00003	Vium-Chr3866	4918	10384	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium3866g00003	1	455	PRT Gene Family	AT3G27190	72.050	0.0	723

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium3866g00003	K00876		-	gmx:100816209	813.142