Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3866g00002 ATGGAAACCAAACGCATTCCAATGGATATGGTCATAGATGTTGTCTCCGGTGCGCACTTCTCCGGTTGGCAGCCTTCAACGACGTCGTCTTCTTCTCCAACTTCCTCTCATCAGCCCTTCATCATTGGTGTCGCTGGAGGCACTGCATCGGGGAAAACCACTGTGTGCGACATTATCATTCAGCAACTGCAAGATCACAGAGTTGTGCTCGTCTGTCAGGATTCATTCTATCGCGGTTTGACGAATGACGAGTTGAAACGCGTTCATGAGTATAACTTCGATCATCCTAATGCATTTGACACAGAGCAACTAGTAGAAACCCTCGGTCAGCTCAAATCTGGACAGTCGGTTCAGATTCCAATATATGATTTCAAGCTTCATCAGAGATCTACCGACAAATCTCGACAGGTCAATGGATCTGATGTAATCATTATGGAGGGTATATTGGTTTTTCATGAACAACGTGTCCGCAACATGATGAATATGAAGATATTTGTTGATGCAGATCCAGACGTGAGGCTTGCCCGCAGAATAAAACGTGATACAGTTGAAAGGGGTAGAGATATACAATCGGTACTGGAACAGTATGCAAAATTTGTTAAGCCTGCCTATGAAGATTTTATTCTTCCATCCAAAAAATATGCTGACATCATAATACCTCGAGGGGGAGAGAATCGTGTAGCAATTGATTTGATTGTTCAACATATCCGCACTAAGCTTGGCCAGCATAACCTCTGCAAAATATATCCGAATTTGAATGTTATACAGTCTACTTTCCAGACTAGAGGCATGCACACTCTTATTCGTGATAGGGACATATCAAAGCATGATTTCATTTTTTATTCAGATCGGCTAATTCGATTGGTAGTGGAACATGGTCTTGGTTACTTGCCGTTTACAGAGAAACAAGTAATCACTCCTACAGGCTCAATTTATACTGGAGTTGATTTTTGTAAGAAATTGTGCGGAGTTTCCATTATTCGAAGTGGCGAGAGTATGGAAAATGCCTTTCGTGCTTGCTGTAAAGGAATAAAGATTGGAAAAATTCTCATTCATCGCGATGGTGATGAAACCCAGCTTATTTATGAGAAGCTTCCTAAAGATATTTCGGAGAGACATGTTCTTCTCATGGACCCAGTACTCGGTACAGGTAACACTGCCAGCGAAGCAGTCGAGCTTCTCATAAAGAAGGGAGTTCCAGAGTCCCAGATAATATTCCTTAACCTCATTTCTGCTCCTGAGGGCATACAATGTATTTGTAAACGTTTTCCGCATCTCAAAATTGTCACATCGGAGATCGAAGAAGGATTAAATGACCAGCTCCAGGTCATACCAGGGTTGGGTGAATTTGGAGACCGTTACTTTGGTACGGACGACTCATAG 1383 0.4237 METKRIPMDMVIDVVSGAHFSGWQPSTTSSSSPTSSHQPFIIGVAGGTASGKTTVCDIIIQQLQDHRVVLVCQDSFYRGLTNDELKRVHEYNFDHPNAFDTEQLVETLGQLKSGQSVQIPIYDFKLHQRSTDKSRQVNGSDVIIMEGILVFHEQRVRNMMNMKIFVDADPDVRLARRIKRDTVERGRDIQSVLEQYAKFVKPAYEDFILPSKKYADIIIPRGGENRVAIDLIVQHIRTKLGQHNLCKIYPNLNVIQSTFQTRGMHTLIRDRDISKHDFIFYSDRLIRLVVEHGLGYLPFTEKQVITPTGSIYTGVDFCKKLCGVSIIRSGESMENAFRACCKGIKIGKILIHRDGDETQLIYEKLPKDISERHVLLMDPVLGTGNTASEAVELLIKKGVPESQIIFLNLISAPEGIQCICKRFPHLKIVTSEIEEGLNDQLQVIPGLGEFGDRYFGTDDS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3866g00002 460 Gene3D - 35 242 IPR027417 -
Vium3866g00002 460 NCBIfam uridine kinase 38 239 IPR000764 -
Vium3866g00002 460 FunFam Uridine kinase 36 242 - -
Vium3866g00002 460 Pfam Phosphoribulokinase / Uridine kinase family 41 227 IPR006083 GO:0005524|GO:0016301
Vium3866g00002 460 PANTHER URIDINE KINASE 32 368 - -
Vium3866g00002 460 CDD UMPK 41 239 IPR000764 -
Vium3866g00002 460 SUPERFAMILY PRTase-like 242 458 IPR029057 -
Vium3866g00002 460 PRINTS Uridine kinase signature 114 129 - -
Vium3866g00002 460 PRINTS Uridine kinase signature 39 56 - -
Vium3866g00002 460 PRINTS Uridine kinase signature 185 196 - -
Vium3866g00002 460 PRINTS Uridine kinase signature 207 220 - -
Vium3866g00002 460 PRINTS Uridine kinase signature 171 181 - -
Vium3866g00002 460 PRINTS Uridine kinase signature 69 80 - -
Vium3866g00002 460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 232 IPR027417 -
Vium3866g00002 460 Gene3D - 243 457 IPR029057 -
Vium3866g00002 460 CDD PRTases_typeI 316 430 IPR000836 -
Vium3866g00002 460 ProSiteProfiles UvrC family, homology region profile. 145 228 IPR001162 GO:0009381
Vium3866g00002 460 FunFam Uridine kinase 243 457 - -
Vium3866g00002 460 Pfam Uracil phosphoribosyltransferase 257 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3866g00002 Vium-Chr3866 4918 10384 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3866g00002 1 459 PRT Gene Family AT3G27190 72.878 0.0 735
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3866g00002 K00876 - gmx:100816209 825.854