Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3863g00002 ATGACTTCAGCGATAGCAATTGAAGATGTGCGGAGGGAGGTGAAAATGTTGAAGGCCTTATCAGGACATAAGAACTTGGTCAAGTTTTATGACGCATTTGAGGATGTCAACAACGTCTACATTGTTATGGAGTTGTGTGAGGGTGGAGAATTACTTGACAGAATTCTAGATAGAGGTGGGAGATACCCAGAGGATGATGCCAAAGCTATTCTTGTACAAATTCTAGATGTAGTTGCATTTTGTCATCTTCAGGGAGTTGTTCACCGTGATCTAAAACCAGAGAATTTTCTATTTGTCTCAAAAGACGAGGATGCTGTGATGAAAGTTATTGATTTTGGGCTCTCTGATTTTGTCAGGCCAGAGCAACGCCTCAACGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAGTGCTCCATAGATCTTACAGTGTTGAAGGAGACTTGTGGAGTATTGGGGTTATATCGTACATATTGTTATGTGGAAGTAGACCATTTTGGGCACGCACTGAATCAGGAATTTTCCGGTCTGTGCTACGAGCGAATCCTAACTTTGATGATTCACCTTGGCCATCAATATCACCAGAAGCTAAAGACTTTGTGAAGAGACTTCTGAACAAAGACCACAGAAAAAGGATGACTGCTGCTCAAGCTTTAGCTCACCCATGGTTGAGAAATGAAAAGAATCCCATTCCTTTAGATATCTCGATTTACAAGTTAGTAAAGTCATATGTGCGTGCCTCACCTTTGAGACGTGCAGCATTGAAGGCCCTCGCGAGAGCATTGACGGAAGATGAGCTATTCTACCTCAGAGCACAGTTCAACCTCTTGGAGCCTAAAGATGGCTGCGTTTCGCTTGAGAATTTTAGAGTTGCTCTCATGAAAAATGCAACTGATGCCATGAAAGAATCAAGGGCCCCTGACATTTTAAATCTGATGGAGGCACTCTCCTATAAAAAAATGGATTTCGAAGAGTTTTGCGCTGCTGCTATCAGTGTATACCAGCTGGAAGTTCATCCAGAATGGGATAGAATTGCCACAACGGCTTTTGAATACTTTGAGGAGACAGGAAACCGAGTCATTTCTGTTGAGGAGTTGGCTCAGGAGATGAACTTGGGTCCTTCAGCTTATTCTTTAATGGGTGATTGGATCAGAAAATCTGATGGAAAACTCAGCTTGGTCGGATATACAAAGTTTTTGCATGGTGTCACGATGCGTAGTTCAAATACAAGACACCGACAGCTAGTATAA 1251 0.4237 MTSAIAIEDVRREVKMLKALSGHKNLVKFYDAFEDVNNVYIVMELCEGGELLDRILDRGGRYPEDDAKAILVQILDVVAFCHLQGVVHRDLKPENFLFVSKDEDAVMKVIDFGLSDFVRPEQRLNDIVGSAYYVAPEVLHRSYSVEGDLWSIGVISYILLCGSRPFWARTESGIFRSVLRANPNFDDSPWPSISPEAKDFVKRLLNKDHRKRMTAAQALAHPWLRNEKNPIPLDISIYKLVKSYVRASPLRRAALKALARALTEDELFYLRAQFNLLEPKDGCVSLENFRVALMKNATDAMKESRAPDILNLMEALSYKKMDFEEFCAAAISVYQLEVHPEWDRIATTAFEYFEETGNRVISVEELAQEMNLGPSAYSLMGDWIRKSDGKLSLVGYTKFLHGVTMRSSNTRHRQLV 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3863g00002 416 SUPERFAMILY Protein kinase-like (PK-like) 6 246 IPR011009 -
Vium3863g00002 416 SUPERFAMILY EF-hand 256 401 IPR011992 -
Vium3863g00002 416 Gene3D - 244 373 - -
Vium3863g00002 416 Gene3D Transferase(Phosphotransferase) domain 1 52 243 - -
Vium3863g00002 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 86 98 IPR008271 GO:0004672|GO:0006468
Vium3863g00002 416 ProSiteProfiles Protein kinase domain profile. 1 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3863g00002 416 CDD STKc_CAMK 6 223 - -
Vium3863g00002 416 PANTHER SERINE/THREONINE-PROTEIN KINASE 5 386 - -
Vium3863g00002 416 Pfam Protein kinase domain 8 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3863g00002 416 FunFam CDPK-related kinase 1 52 238 - -
Vium3863g00002 416 Gene3D - 263 331 - -
Vium3863g00002 416 FunFam CDPK-related kinase 1 2 50 - -
Vium3863g00002 416 Gene3D Phosphorylase Kinase; domain 1 2 51 - -
Vium3863g00002 416 FunFam CDPK-related kinase 1 258 331 - -
Vium3863g00002 416 SMART serkin_6 3 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3863g00002 Vium-Chr3863 20393 25379 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3863g00002 1 413 EF-hand Containing Proteins AT2G46700 74.879 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium3863g00002 Pkinase 6.6e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3863g00002 K13412 - gmx:100803631 788.104