Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3863g00001 ATGGGGCATTGTTGCAGCAAAAACATCGCCGTCAACAACGAGACGGTGCCCCCCGATCACCGCCCCAAGACTCCGCATTATGCTCCGCCGTCTCCTCCACCGGCTTCAGGGAGCTCGCTATCCGCCGCGACGCCGGGGAGGAACACACCGGCACACTCGTTTTCCACCAGCCCCTTCCCGAGTCCTCTCCCACCCGGGGTGGCGCCGTCGCCAGCAAAGACTCCGGGGAGGAAGTTCCGGTGGCCGCTACCGCCGCCATCTCCGGCGAAGCCGATCATGGCGGCGCTGCTGCGGCGGCAGGGAAAGGCGAGGCCTAAGGAAGGACCTATACCGGAGGAGCAAGGGGAGGGTGGCGGTGAGGGAGAGAGGTCGCTGGATAAGAGTTTCGGTTATGGAAAGAATTTTGGGGCGAAGTTCGAGTTGGGGAAGGAAGTGGGTCGAGGGCATTTCGGTCACACTTGTTGGGCCAAAGGGAAGAAGGGAGAGCTTAAGGGACAATCCGTTGCTGTAAAAATCATATCCAAAGCTAAGATGACTTCAGCGATAGCAATTGAAGATGTGCGGAGGGAGGTGAAAATGTTGAAGGCCTTATCAGGACATAAGAACTTGGTCAAGTTTTATGACGCATTTGAGGATGTCAACAACGTCTACATTGTTATGGAGTTGTGTGAGGGTGGAGAATTACTTGACAGAATTCTAGATAGAGGTGGGAGATACCCAGAGGATGATGCCAAAGCTATTCTTGTACAAATTCTAGATGTAGTTGCATTTTGTCATCTTCAGGGAGTTGTTCACCGTGATCTAAAACCAGAGAATTTTCTATTTGTCTCAAAAGACGAGGATGCTGTGATGAAAGTTATTGATTTTGGGCTCTCTGATTTTGTCAGGCCAGAGCAACGCCTCAACGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAGTGCTCCATAGATCTTACAGTGTTGAAGGAGACTTGTGGAGTATTGGGGTTATATCGTACATATTGTTATGTGGAAGTAGACCATTTTGGGCACGCACTGAATCAGGAATTTTCCGGTCTGTGCTACGAGCGAATCCTAACTTTGATGATTCACCTTGGCCATCAATATCACCAGAAGCTAAAGACTTTGTGAAGAGACTTCTGAACAAAGACCACAGAAAAAGGATGACTGCTGCTCAAGCTTTAGCTCACCCATGGTTGAGAAATGAAAAGAATCCCATTCCTTTAGATATCTCGATTTACAAGTTAGTAAAGTCATATGTGCGTGCCTCACCTTTGAGACGTGCAGCATTGAAGGCCCTCGCGAGAGCATTGACGGAAGATGAGCTATTCTACCTCAGAGCACAGTTCAACCTCTTGGAGCCTAAAGATGGCTGCGTTTCGCTTGAGAATTTTAGAGTTGCTCTCATGAAAAATGCAACTGATGCCATGAAAGAATCAAGGGCCCCTGACATTTTAAATCTGATGGAGGCACTCTCCTATAAAAAAATGGATTTCGAAGAGTTTTGCGCTGCTGCTATCAGTGTATACCAGCTGGAAGTTCATCCAGAATGGGATAGAATTGCCACAACGGCTTTTGAATACTTTGAGGAGACAGGAAACCGAGTCATTTCTGTTGAGGAGTTGGCTCAGGAGATGAACTTGGGTCCTTCAGCTTATTCTTTAATGGGTGATTGGATCAGAAAATCTGATGGAAAACTCAGCTTGGTCGGATATACAAAGTTTTTGCATGGTGTCACGATGCGTAGTTCAAATACAAGACACCGACAGCTAGTATAA 1782 0.4787 MGHCCSKNIAVNNETVPPDHRPKTPHYAPPSPPPASGSSLSAATPGRNTPAHSFSTSPFPSPLPPGVAPSPAKTPGRKFRWPLPPPSPAKPIMAALLRRQGKARPKEGPIPEEQGEGGGEGERSLDKSFGYGKNFGAKFELGKEVGRGHFGHTCWAKGKKGELKGQSVAVKIISKAKMTSAIAIEDVRREVKMLKALSGHKNLVKFYDAFEDVNNVYIVMELCEGGELLDRILDRGGRYPEDDAKAILVQILDVVAFCHLQGVVHRDLKPENFLFVSKDEDAVMKVIDFGLSDFVRPEQRLNDIVGSAYYVAPEVLHRSYSVEGDLWSIGVISYILLCGSRPFWARTESGIFRSVLRANPNFDDSPWPSISPEAKDFVKRLLNKDHRKRMTAAQALAHPWLRNEKNPIPLDISIYKLVKSYVRASPLRRAALKALARALTEDELFYLRAQFNLLEPKDGCVSLENFRVALMKNATDAMKESRAPDILNLMEALSYKKMDFEEFCAAAISVYQLEVHPEWDRIATTAFEYFEETGNRVISVEELAQEMNLGPSAYSLMGDWIRKSDGKLSLVGYTKFLHGVTMRSSNTRHRQLV 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3863g00001 593 FunFam CDPK-related kinase 1 132 227 - -
Vium3863g00001 593 FunFam Calcium-dependent protein kinase SK5 311 406 - -
Vium3863g00001 593 Pfam Protein kinase domain 139 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3863g00001 593 ProSiteProfiles Protein kinase domain profile. 139 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3863g00001 593 MobiDBLite consensus disorder prediction 37 56 - -
Vium3863g00001 593 Gene3D - 440 508 - -
Vium3863g00001 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Vium3863g00001 593 FunFam CDPK-related kinase 1 436 508 - -
Vium3863g00001 593 MobiDBLite consensus disorder prediction 100 125 - -
Vium3863g00001 593 Gene3D - 421 550 - -
Vium3863g00001 593 CDD STKc_CAMK 138 400 - -
Vium3863g00001 593 MobiDBLite consensus disorder prediction 57 71 - -
Vium3863g00001 593 FunFam CDPK-related kinase 3 131 303 - -
Vium3863g00001 593 MobiDBLite consensus disorder prediction 22 36 - -
Vium3863g00001 593 SMART serkin_6 139 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3863g00001 593 PANTHER SERINE/THREONINE-PROTEIN KINASE 123 563 - -
Vium3863g00001 593 SUPERFAMILY EF-hand 433 578 IPR011992 -
Vium3863g00001 593 SUPERFAMILY Protein kinase-like (PK-like) 138 424 IPR011009 -
Vium3863g00001 593 ProSitePatterns Protein kinases ATP-binding region signature. 145 171 IPR017441 GO:0005524
Vium3863g00001 593 MobiDBLite consensus disorder prediction 1 125 - -
Vium3863g00001 593 Gene3D Phosphorylase Kinase; domain 1 133 228 - -
Vium3863g00001 593 Gene3D Transferase(Phosphotransferase) domain 1 229 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3863g00001 Vium-Chr3863 14272 25379 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3863g00001 49 584 EF-hand Containing Proteins AT3G50530 61.189 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium3863g00001 Pkinase 1.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3863g00001 K13412 - gmx:100803631 1040.8