Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3862g00015 ATGGAGGTTGGCCTCAACAAGGAGAACATGGGCTTTGAAGAAACTGAGCTAAGGCTTGGACTCCCTGGAGGAAACGCTGCCTCACCCACTGAAGAACTTCTTAGGAAGAGAGGTTTCTCTGAGACTCAAACTCACCATGACACTGCCACCGTAGATTTGATGCTTAATCTTTCATCCAAGGAACCAACCACTGGACCAGATCCATCTCATAAACACAACACCTTGCCTAAGGACAACACCCTTCTCCCTGCAGATCCTGCTAAGCCTCCAGCCAAGGCACAGGTGGTGGGTTGGCCACCTGTGCGGTCGTTCCGGAAGAACATGTTAGCTGTGCAAAAGAGTATTGGAGAAGAGAGTGAGAAGAATAGCAGCCCTAATGCAAGCTTTGTGAAAGTTAGCATGGATGGAGCACCTTATCTCCGCAAAGTGGACTTGAAGATGTATAAGAGTTACCGCGAGCTCTCTGATTCTTTAGGCAAAATGTTCAGCTCCTTCACCATTGGGAATTGTGAATCCCAAGGAATGAAGGATTTCATGAATGAGAGCAAACTGATGGATCTTTTGAACAGCTCTGATTATGTCCCAACCTATGAGGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGCATCATGAAAGGAAAGGAGGCTATTGGTCTTGGTCTTGCACCAAGAGCCATGGCAAAAAGCAAGAACAGGAGCTAG 744 0.4731 MEVGLNKENMGFEETELRLGLPGGNAASPTEELLRKRGFSETQTHHDTATVDLMLNLSSKEPTTGPDPSHKHNTLPKDNTLLPADPAKPPAKAQVVGWPPVRSFRKNMLAVQKSIGEESEKNSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTIGNCESQGMKDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKSKNRS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3862g00015 247 SUPERFAMILY CAD & PB1 domains 117 226 - -
Vium3862g00015 247 FunFam Auxin-responsive protein 122 238 - -
Vium3862g00015 247 Gene3D - 121 238 - -
Vium3862g00015 247 ProSiteProfiles PB1 domain profile. 127 227 IPR000270 GO:0005515
Vium3862g00015 247 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 232 IPR003311 GO:0005634|GO:0006355
Vium3862g00015 247 Pfam AUX/IAA family 14 234 IPR033389 -
Vium3862g00015 247 MobiDBLite consensus disorder prediction 40 81 - -
Vium3862g00015 247 MobiDBLite consensus disorder prediction 44 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3862g00015 Vium-Chr3862 124809 127706 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3862g00015 120 230 B3 DNA Binding Superfamily AT3G61830 33.333 1.40e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vium3862g00015 AUX_IAA 3.8e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3862g00015 K14484 - gmx:100810013 412.92