Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3862g00014 ATGGGGAGCTATGAAATTGAGCTGAATCTTAGGGCCACAGAGTTGAGGTTGGGGTTGCCCGGGAGTGATGAACCTCAAGAGAAACGTCCATGCAGTGGCTCTGTTGTCAGAAACAGCAACAAGAGATCTTCACCAGAATTGGAAGAGTCCAGGTGCAAAAGCAACATCAACTCTGATTCTTCGGACTCCACAACCACAAGTGATCACAACGAAGACAGTGTCCAACCTGCAAAGGTACAAGTAGTGGGGTGGCCACCGATTAGATCTTTTAGGAAGAACAGTCTACAACAGAAAAAGGTGGAGCAGGGCGATGGAACTGGAATGTACGTAAAAGTCAGCATGGCTGGTGCACCTTACTTGAGGAAGATAGATCTCAAGGTTTACCAAAGCTACCCAGAACTCCTCAAGGCCTTGCAAAATTTGTTCAAGTGCACATTTGGTGAATACTCAGAAAGGGAGGGATACAACGGATCTGAATACGCTCCTACTTATGAAGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTCGTATTCTCCTGCAAGAGGCTGAGAATAATCAAAGGATCAGAAGCAAAGGGGTTGGGTTGTTTATGA 612 0.4624 MGSYEIELNLRATELRLGLPGSDEPQEKRPCSGSVVRNSNKRSSPELEESRCKSNINSDSSDSTTTSDHNEDSVQPAKVQVVGWPPIRSFRKNSLQQKKVEQGDGTGMYVKVSMAGAPYLRKIDLKVYQSYPELLKALQNLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVFSCKRLRIIKGSEAKGLGCL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3862g00014 203 MobiDBLite consensus disorder prediction 56 74 - -
Vium3862g00014 203 SUPERFAMILY CAD & PB1 domains 103 191 - -
Vium3862g00014 203 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 198 IPR003311 GO:0005634|GO:0006355
Vium3862g00014 203 Pfam AUX/IAA family 13 201 IPR033389 -
Vium3862g00014 203 FunFam Auxin-responsive protein 102 203 - -
Vium3862g00014 203 MobiDBLite consensus disorder prediction 17 77 - -
Vium3862g00014 203 ProSiteProfiles PB1 domain profile. 107 199 IPR000270 GO:0005515
Vium3862g00014 203 Gene3D - 102 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3862g00014 Vium-Chr3862 111627 113136 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3862g00014 98 200 B3 DNA Binding Superfamily AT2G46530 36.893 9.94e-13 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vium3862g00014 AUX_IAA 2e-58 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3862g00014 K14484 - gmx:100792134 328.176