Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3862g00013 ATGGCGAATAACCCTTCCGACGCTCCCGCAGACGATTTCCTTGAACAAATTCTCGGCCTCCCGACCTTCGCTTCCGGAGACTCAGGCCTCTCTGCTGCCGATGTTGGACTCTCCGGTACCACTTCTCCGGCTCCGATGATGCTGCAGCTCAACTCTGCCGACGCCAACGCTCACCTCACCGGCGCCGCCTTCCACGCGCCGGTGTATCAGTTAGGTCTTAGCTTGGACCAAGGCAAAGGAGGGTTCATGAAGCCCGAGGAAGCCTCCGCTAGTGGAAAGCGCTATCGCGACGACGTGGTTGATGGTAGAGCTAAGAATGTTTTTCATGGGCAACCCATGCCTTCTACTATGCCCTCTGCTCCACATCCTCCAGCAATACGCCCTAGGGTGCGAGCAAGAAGAGGACAGGCTACAGATCCACATAGCATAGCTGAACGGTTGCGCAGAGAAAGAATAGCAGAAAGAATCAGGGCGTTGCAAGAACTTGTTCCTAGTGTCAATAAGACGGATAGAGCTGCCATGTTAGATGAAATTGTTGATTATGTCAAGTTCCTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCGGGTGCAGTGGCACCACTGGTAACTGACATACCGTTATCATCAGTTGAGGAAGAAGGTGGTGAAGGTGCTAGAAACCGACCAGCATGGGACAAGTTGTCAAATGATGGCACAGAAAGACAGGTAGCCAAGCTTATGGAAGAAAACGTTGGGGCTGCCATGCAGTTTCTTCAATCAAAGGCTCTCTGCATCATGCCCATCTCACTAGCATCGGCAATTTACCAGTCACAACCACCGGACTCTTCTAGTGTAGTGAAGCCTGAAACTAATCCTCCTTCATAG 879 0.5154 MANNPSDAPADDFLEQILGLPTFASGDSGLSAADVGLSGTTSPAPMMLQLNSADANAHLTGAAFHAPVYQLGLSLDQGKGGFMKPEEASASGKRYRDDVVDGRAKNVFHGQPMPSTMPSAPHPPAIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGGEGARNRPAWDKLSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDSSSVVKPETNPPS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3862g00013 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Vium3862g00013 292 SMART finulus 142 191 IPR011598 GO:0046983
Vium3862g00013 292 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 87 271 - -
Vium3862g00013 292 Gene3D - 131 193 IPR036638 GO:0046983
Vium3862g00013 292 Pfam Helix-loop-helix DNA-binding domain 141 185 IPR011598 GO:0046983
Vium3862g00013 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 195 IPR036638 GO:0046983
Vium3862g00013 292 FunFam Basic helix-loop-helix transcription factor 131 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3862g00013 Vium-Chr3862 96984 100701 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3862g00013 64 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 80.851 9.31e-120 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium3862g00013 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3862g00013 - - gmx:100797789 519.62