Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium3862g00005 | ATGGGTCTGGAAAAGAATATTTGTGTATTTCTTGATGTCTCAATTGATGCGGACCCCGTGGAAAGAATTGTTATTCAGCTTTTTGATAGTATTGTCCCAAAGACAGCCGAGAATTTTCGGGCGCTTTGTACAGGTGAGAAGGGCATTGGAGAATCAACTGGGAAACCTTTGCATTATAAGGGAACAAGCTTTCATCGTATAATTAGAGGATTCATGGCTCAAGGTGGTGATTTTTCAAGGGGTAATGGCACTGGCGGGGAAAGTATATATGGTGGAAAATTTGCGGATGAAAATTTCAAACTAAGACATGATGGACCTGGCTTTCTTTCTATGGCTAATAGTGGCCCTAATACAAATGGATCTCAGTTTTTTATTACATTCAAGCGCCAACCACATCTTGATGGGAAACATGTTGTTTTTGGAAAAGTTGTCAATGGATTGGATGTTCTGAAGAAAATTGAGCTGGCAGGAACATCTGATGGGAAACCTACCCAGATAGTTAAAATTGTTGATTGCGGTGAAGTTTCTGAAACAAAAACTCAGCATACTGCTGAGAAGGAAAAAGGGAAAATGAGAAAAACAGGAAAACCCCTTCCTTCTGATGATAGTTCCGACTCTACTGACAAAAAGTCAAGGGGGAAAAGAAAAAAATCTTCCAAAGACACAAGGAAAAAGAGGAGAAGATACTCAACATCTGATAGTGATAGTTATTCCTCAGATTCTGAGTCAGATTCAGCTTCTGATTCTGAATCGGATTCATCTGATTCTGATTCTAGTTCCTCTAGCTATGGGAAACACCAGAAGAGGAGAAATAAGCGCAGGCATGGGAAGAAGAGGAAATTTGGACGAAAGCAGAGCAAGAAAAGCAGGCACAGTCGAAGCAGAAGATCAAAGCACAAGTCTAGGCGCAGCTATGATGATTCAAGTGATAGCTCTAGTGGTAGCAGTAGCAGTAGTAGTTCTGGCGATGAGAAAACTGATCGTCGCACCTCAATTCGTCAAAGACATGTTGGCAACAAAGCACAAAGAAATCTACACACAGAAAAACAACCTTCTAGTCTTCCTCGGCAAGATCAAATTATTCCAGAGCAAACAACGGATACCGAGGTTAGAAGAACTGTGGACAAGCAATCACATGAAGAAGGTGAATTGTCTCCAGAAAATGGGGCATTTGTGAATAACGGGCATGATACTAAAGCTGAATTTAGTGAACCTGCTAAGCAACATGCTAATTCAGATGATTCAAAGGAGAATAGAAGTGCAAGAACTGGGCGAAGTCCTACCAAGGATTCTGGTGAGCTAAACCAGGGACGTGCTTTGTTGCTGGCTAGTTCTGGTCAAAAAGCATCTGAACATGCAGCCCCTAAACATGGTCAAAGGTTTTCAAAAAGCCCTTCACCAAATGGCACACCTAAGCGTATTAAAAAAGGACGCGGCTTTACTGAGCGTTATGCCTTTGCCCGCAGATATCGTACTCCATCTCCTGAGCGGTCACCTCATGCATATAGGTATGGTGATAGAAATATAAGAAGGAACTTTGATAGAAACACAAGCTACAGAAGTTATTCTGAGCGCTCTCCACCACGACGTTATCGAAGCCCACCTGGTGGCAGAAATCGTCCAAGATACCAAAGCAGGAGAAGTCTCAGTAGGAGCATCTCTCGCAGTCCAGTGCGTGGGCGTTTTAGAGACCGTGACCGGAGTCGGAGCCCAAGACGTAGTGTTAGTCCTGAAGACAGGCGACCTCCAATAAGTGACAGATTAAAATCCCGACTTGGTCCAAGAAGCGATGAACGATTGGCAGACAGAAGGGGGAGGTCAAAGTCCAATTCTAGGAGCAGTGGCTCATCTCCGTCCAGATCCCCTGATGCTACACCACCAAAACGATATGATAAAAGGACTTCCCTATCTCGTAGCAGGTCTAAGTCCAGCTCTTCTTCCGGTCAGAAGGGTTTAGTTTCTTATGGAGATGCTAGTCCTGATTCTGGAGTAAGGTGA | 1998 | 0.4354 | MGLEKNICVFLDVSIDADPVERIVIQLFDSIVPKTAENFRALCTGEKGIGESTGKPLHYKGTSFHRIIRGFMAQGGDFSRGNGTGGESIYGGKFADENFKLRHDGPGFLSMANSGPNTNGSQFFITFKRQPHLDGKHVVFGKVVNGLDVLKKIELAGTSDGKPTQIVKIVDCGEVSETKTQHTAEKEKGKMRKTGKPLPSDDSSDSTDKKSRGKRKKSSKDTRKKRRRYSTSDSDSYSSDSESDSASDSESDSSDSDSSSSSYGKHQKRRNKRRHGKKRKFGRKQSKKSRHSRSRRSKHKSRRSYDDSSDSSSGSSSSSSSGDEKTDRRTSIRQRHVGNKAQRNLHTEKQPSSLPRQDQIIPEQTTDTEVRRTVDKQSHEEGELSPENGAFVNNGHDTKAEFSEPAKQHANSDDSKENRSARTGRSPTKDSGELNQGRALLLASSGQKASEHAAPKHGQRFSKSPSPNGTPKRIKKGRGFTERYAFARRYRTPSPERSPHAYRYGDRNIRRNFDRNTSYRSYSERSPPRRYRSPPGGRNRPRYQSRRSLSRSISRSPVRGRFRDRDRSRSPRRSVSPEDRRPPISDRLKSRLGPRSDERLADRRGRSKSNSRSSGSSPSRSPDATPPKRYDKRTSLSRSRSKSSSSSGQKGLVSYGDASPDSGVR | 665 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium3862g00005 | 665 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 64 | 76 | IPR002130 | GO:0000413|GO:0003755 | |
| Vium3862g00005 | 665 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 122 | 134 | IPR002130 | GO:0000413|GO:0003755 | |
| Vium3862g00005 | 665 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 27 | 42 | IPR002130 | GO:0000413|GO:0003755 | |
| Vium3862g00005 | 665 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 107 | 122 | IPR002130 | GO:0000413|GO:0003755 | |
| Vium3862g00005 | 665 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 135 | 150 | IPR002130 | GO:0000413|GO:0003755 | |
| Vium3862g00005 | 665 | MobiDBLite | consensus disorder prediction | 427 | 443 | - | - | |
| Vium3862g00005 | 665 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 10 | 174 | IPR002130 | GO:0000413|GO:0003755 | |
| Vium3862g00005 | 665 | MobiDBLite | consensus disorder prediction | 177 | 665 | - | - | |
| Vium3862g00005 | 665 | MobiDBLite | consensus disorder prediction | 557 | 609 | - | - | |
| Vium3862g00005 | 665 | MobiDBLite | consensus disorder prediction | 400 | 426 | - | - | |
| Vium3862g00005 | 665 | FunFam | Peptidyl-prolyl cis-trans isomerase CYP95 | 1 | 182 | - | - | |
| Vium3862g00005 | 665 | SUPERFAMILY | Cyclophilin-like | 8 | 176 | IPR029000 | - | |
| Vium3862g00005 | 665 | Gene3D | - | 2 | 183 | IPR029000 | - | |
| Vium3862g00005 | 665 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 59 | 76 | IPR020892 | GO:0003755|GO:0006457 | |
| Vium3862g00005 | 665 | MobiDBLite | consensus disorder prediction | 178 | 212 | - | - | |
| Vium3862g00005 | 665 | MobiDBLite | consensus disorder prediction | 639 | 653 | - | - | |
| Vium3862g00005 | 665 | MobiDBLite | consensus disorder prediction | 475 | 518 | - | - | |
| Vium3862g00005 | 665 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 20 | 173 | IPR002130 | GO:0000413|GO:0003755 | |
| Vium3862g00005 | 665 | MobiDBLite | consensus disorder prediction | 344 | 367 | - | - | |
| Vium3862g00005 | 665 | CDD | cyclophilin_ABH_like | 9 | 173 | - | - | |
| Vium3862g00005 | 665 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 9 | 175 | - | - | |
| Vium3862g00005 | 665 | MobiDBLite | consensus disorder prediction | 265 | 300 | - | - | |
| Vium3862g00005 | 665 | MobiDBLite | consensus disorder prediction | 368 | 383 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium3862g00005 | Vium-Chr3862 | 13146 | 21086 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium3862g00005 | 25 | 171 | U-box Gene Family | AT5G67530 | 48.322 | 1.06e-32 | 131 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium3862g00005 | K09566 | - | gmx:100807327 | 768.074 |