Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3862g00004 ATGGGTCTGGAAAAGAATATTTGTGTATTTCTTGATGTCTCAATTGATGCGGACCCCGTGGAAAGAATTGTTATTCAGCTTTTTGATAGTATTGTCCCAAAGACAGCCGAGAATTTTCGGGCGCTTTGTACAGGTGAGAAGGGCATTGGAGAATCAACTGGGAAACCTTTGCATTATAAGGGAACAAGCTTTCATCGTATAATTAGAGGATTCATGGCTCAAGGTGGTGATTTTTCAAGGGGTAATGGCACTGGCGGGGAAAGTATATATGGTGGAAAATTTGCGGATGAAAATTTCAAACTAAGACATGATGGACCTGGCTTTCTTTCTATGGCTAATAGTGGCCCTAATACAAATGGATCTCAGTTTTTTATTACATTCAAGCGCCAACCACATCTTGATGGGAAACATGTTGTTTTTGGAAAAGTTGTCAATGGATTGGATGTTCTGAAGAAAATTGAGCTGGCAGGAACATCTGATGGGAAACCTACCCAGATAGTTAAAATTGTTGATTGCGGTGAAGTTTCTGAAACAAAAACTCAGCATACTGCTGAGAAGGAAAAAGGGAAAATGAGAAAAACAGGAAAACCCCTTCCTTCTGATGATAGTTCCGACTCTACTGACAAAAAGTCAAGGGGGAAAAGAAAAAAATCTTCCAAAGACACAAGGAAAAAGAGGAGAAGATACTCAACATCTGATAGTGATAGTTATTCCTCAGATTCTGAGTCAGATTCAGCTTCTGATTCTGAATCGGATTCATCTGATTCTGATTCTAGTTCCTCTAGCTATGGGAAACACCAGAAGAGGAGAAATAAGCGCAGGCATGGGAAGAAGAGGAAATTTGGACGAAAGCAGAGCAAGAAAAGCAGGCACAGTCGAAGCAGAAGATCAAAGCACAAGTCTAGGCGCTATGATGATTCAAGTGATAGCTCTAGTGGTAGCAGTAGCAGTAGTAGTTCTGGCGATGAGAAAACTGATCGTCGCACCTCAATTCGTCAAAGACATGTTGGCAACAAAGCACAAAGAAATCTACACACAGAAAAACAACCTTCTAGTCTTCCTCGGCAAGATCAAATTATTCCAGAGCAAACAACGGATACCGAGGTTAGAAGAACTGTGGACAAGCAATCACATGAAGAAGGTGAATTGTCTCCAGAAAATGGGGCATTTGTGAATAACGGGCATGATACTAAAGCTGAATTTAGTGAACCTGCTAAGCAACATGCTAATTCAGATGATTCAAAGGAGAATAGAAGTGCAAGAACTGGGCGAAGTCCTACCAAGGATTCTGGTGAGCTAAACCAGGGACGTGCTTTGTTGCTGGCTAGTTCTGGTCAAAAAGCATCTGAACATGCAGCCCCTAAACATGGTCAAAGGTTTTCAAAAAGCCCTTCACCAAATGGCACACCTAAGCGTATTAAAAAAGGACGCGGCTTTACTGAGCGTTATGCCTTTGCCCGCAGATATCGTACTCCATCTCCTGAGCGGTCACCTCATGCATATAGGTATGGTGATAGAAATATAAGAAGGAACTTTGATAGAAACACAAGCTACAGAAGTTATTCTGAGCGCTCTCCACCACGACGTTATCGAAGCCCACCTGGTGGCAGAAATCGTCCAAGATACCAAAGCAGGAGAAGTCTCAGTAGGAGCATCTCTCGCAGTCCAGTGCGTGGGCGTTTTAGAGACCGTGACCGGAGTCGGAGCCCAAGACGTAGTGTTAGTCCTGAAGACAGGCGACCTCCAATAAGTGACAGATTAAAATCCCGACTTGGTCCAAGAAGCGATGAACGATTGGCAGACAGAAGGGGGAGGTCAAAGTCCAATTCTAGGAGCAGTGGCTCATCTCCGTCCAGATCCCCTGATGCTACACCACCAAAACGATATGATAAAAGGACTTCCCTATCTCGTAGCAGGTCTAAGTCCAGCTCTTCTTCCGGTCAGAAGGGTTTAGTTTCTTATGGAGATGCTAGTCCTGATTCTGGAGTAAGGTGA 1995 0.4351 MGLEKNICVFLDVSIDADPVERIVIQLFDSIVPKTAENFRALCTGEKGIGESTGKPLHYKGTSFHRIIRGFMAQGGDFSRGNGTGGESIYGGKFADENFKLRHDGPGFLSMANSGPNTNGSQFFITFKRQPHLDGKHVVFGKVVNGLDVLKKIELAGTSDGKPTQIVKIVDCGEVSETKTQHTAEKEKGKMRKTGKPLPSDDSSDSTDKKSRGKRKKSSKDTRKKRRRYSTSDSDSYSSDSESDSASDSESDSSDSDSSSSSYGKHQKRRNKRRHGKKRKFGRKQSKKSRHSRSRRSKHKSRRYDDSSDSSSGSSSSSSSGDEKTDRRTSIRQRHVGNKAQRNLHTEKQPSSLPRQDQIIPEQTTDTEVRRTVDKQSHEEGELSPENGAFVNNGHDTKAEFSEPAKQHANSDDSKENRSARTGRSPTKDSGELNQGRALLLASSGQKASEHAAPKHGQRFSKSPSPNGTPKRIKKGRGFTERYAFARRYRTPSPERSPHAYRYGDRNIRRNFDRNTSYRSYSERSPPRRYRSPPGGRNRPRYQSRRSLSRSISRSPVRGRFRDRDRSRSPRRSVSPEDRRPPISDRLKSRLGPRSDERLADRRGRSKSNSRSSGSSPSRSPDATPPKRYDKRTSLSRSRSKSSSSSGQKGLVSYGDASPDSGVR 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3862g00004 664 MobiDBLite consensus disorder prediction 399 425 - -
Vium3862g00004 664 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Vium3862g00004 664 MobiDBLite consensus disorder prediction 474 517 - -
Vium3862g00004 664 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 175 - -
Vium3862g00004 664 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 1 182 - -
Vium3862g00004 664 SUPERFAMILY Cyclophilin-like 8 176 IPR029000 -
Vium3862g00004 664 MobiDBLite consensus disorder prediction 343 366 - -
Vium3862g00004 664 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 59 76 IPR020892 GO:0003755|GO:0006457
Vium3862g00004 664 MobiDBLite consensus disorder prediction 178 212 - -
Vium3862g00004 664 MobiDBLite consensus disorder prediction 556 608 - -
Vium3862g00004 664 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 20 173 IPR002130 GO:0000413|GO:0003755
Vium3862g00004 664 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Vium3862g00004 664 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Vium3862g00004 664 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Vium3862g00004 664 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Vium3862g00004 664 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Vium3862g00004 664 MobiDBLite consensus disorder prediction 367 382 - -
Vium3862g00004 664 MobiDBLite consensus disorder prediction 177 664 - -
Vium3862g00004 664 MobiDBLite consensus disorder prediction 638 652 - -
Vium3862g00004 664 MobiDBLite consensus disorder prediction 426 442 - -
Vium3862g00004 664 CDD cyclophilin_ABH_like 9 173 - -
Vium3862g00004 664 Gene3D - 2 183 IPR029000 -
Vium3862g00004 664 MobiDBLite consensus disorder prediction 265 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3862g00004 Vium-Chr3862 12970 21086 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3862g00004 25 171 U-box Gene Family AT5G67530 48.322 1.05e-32 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3862g00004 K09566 - gmx:100791082 765.377