Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3861g00001 ATGGATTTCACAGCGGAGAAGAAGGAATCAGAGAACAACAGCGCCAATAACCCCGAAAACGCTCATCAAACGTTAGATTCTTCTTCTCAATTGGCGTCGGCACTTGATTCAAGCAACAAAGAAACCGAAGAACGACAATCTCGTGAACTCAAAGCTGGTCTTCACCCTCTGAAGAACAAATTTGTCTTCTGGTACACTCGTCGAACACCTGGAGTTCGAAACCAGACCTCATATGAGGACAACATAAAGAAAATTGTTGAATTTAGTACGGTTGAAGGATTTTGGGTCTGCTATTGCCATCTTGCCCGGCCTGCTTCTTTGCCTAGTCCCACAGATTTGCACCTTTTCAAGGAAGGAATTCGCCCTTTATGGGAGGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAGGTTGTCTCGGGTCGTTTTTGGGAGGACCTGGTTCTTGCCTTAGTGGGTGACCAATTGGATTATGGGGATAACATATGCGGTGCAGTACTAAGTATTCGTTTCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCTTCTGACCATCAGGCTGTAATGGCCCTGAGAGATTCAATTAAACGTCACTTGAAGCTTCCTCACAGCTATGTTATGGAGTACAAACCCCATGACGCCTCTCTGCGAGACAATTCATCCTACAGGAACACTTGGTTGAGAGGGTAG 705 0.4482 MDFTAEKKESENNSANNPENAHQTLDSSSQLASALDSSNKETEERQSRELKAGLHPLKNKFVFWYTRRTPGVRNQTSYEDNIKKIVEFSTVEGFWVCYCHLARPASLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPHDASLRDNSSYRNTWLRG 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3861g00001 234 Pfam Eukaryotic initiation factor 4E 56 214 IPR001040 GO:0003723|GO:0003743|GO:0006413
Vium3861g00001 234 MobiDBLite consensus disorder prediction 14 37 - -
Vium3861g00001 234 FunFam Eukaryotic translation initiation factor NCBP 27 227 - -
Vium3861g00001 234 MobiDBLite consensus disorder prediction 1 50 - -
Vium3861g00001 234 SUPERFAMILY eIF4e-like 42 230 IPR023398 -
Vium3861g00001 234 Gene3D RNA Cap, Translation Initiation Factor Eif4e 27 227 IPR023398 -
Vium3861g00001 234 ProSitePatterns Eukaryotic initiation factor 4E signature. 112 135 IPR019770 GO:0003723|GO:0003743|GO:0005737|GO:0006413
Vium3861g00001 234 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 26 223 IPR001040 GO:0003723|GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3861g00001 Vium-Chr3861 2342 5499 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3861g00001 42 234 Eukaryotic Initiation Factors Gene Family AT5G18110 86.528 1.39e-127 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3861g00001 K03259 - gmx:100499744 442.965