Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium385g00005 ATGAAGAACCTGAGGGTTTGTTTCACTTACTTTTTTCTTGCAATCGTTCTTGTTCTGCTTACTCCTTCCTCGGTTGCACAGCTATCAACAAGTGAGAATAGAATTCTATTCCAAGTTCAGAAGCTTCTTGAATATCCTCAAGCTCTTCAAGGGTGGACAAGATGGACCAACTTGTGCTTCCTCCCTCCCTCTTCTTCCCTCAAGATAGTTTGCTCAAATGGTCATTTGACAGAACTAACTATCATTGGAAACAAGACCTCCCCATCTTCACACAATCCCCAGGCAGGTTCCTGGACTTCCCTTCAAACACTTTCAGGAAAATTCTCCATCGATTCTTTCTTCACTGTCATGACAAAGCTTTCAAATTTGAAGGTGTTGTCCTTAGTGTCCTTGGGTTTGTGGGGTCCTTTACCATCCAAAATCAACAGGTTTTGGTCTCTGGAAGTGCTAAACATTAGCTCAAATTTCATTTATGGGGAAATTCCACCATCCATATCCTCAATGATGAATCTAAGGAGTCTCGTTTTGGTTAATAATCTCTTCAATGGAAGTGTCCCTGATCTCCAGAGATTAACTTCTCTTGAAGAGCTCAACTTGGGAGGTAACAAACTGGGTCCTGAATTCCCTTTAGTGGGAAAGAATCTTGTCACTATAATCTTGAGAAATAATTCACTGAGATCTCGTATTCCTCCAGAGATTGAGCACTTCGACAAACTTCAGGTATTTGATGTATCTTCCAATGATGTTTTTGGAAACATCCCGTCCTTTTTTATGTCTATGCCTTCCCTTCATTCCCTAAACTTGGCTGCAAACCATCTAAGTGGTAACCTCTCAGTGAATAAGGCATGTAGTTCTTCACTAACATTTGTGGATATCTCACACAACCTTCTGGTTGGAAAATTGCCTGCGTGCCTTGGTTCAATGTCTTCAAAGGCCACAGTACTATATTCTGGAAATTGTTTCTCAACCAAAAGCTTAAATAATCAGCATCCATCTTCTTTTTGCAAGAGAGAGGGAGCTTTAGCTGTTAAGCCTCCAGCTAGAAAGCCGCAGAATGATTCAAATTCGGGTGCCAAACTAGGCGTAGTGATTGGAATAATTGGAGGAGCTGTAGTAATTGCTGGACTTCTGGTTTTTCTCATTGTGTTCATCTTTAGAAAGACCAATGGAGAAAGATCACATCATAAAATGGACAAATATGTTGCTAATAAATATTCTGCCAGTGCATCTCCTGGACCAAACGGTACAAGACATATTCCTCAGGCCATGAAGCAAGCTGCACTTGGACTTCCACCATACCGTATTTTCACATCAGAGGAAATTGAAGATGCAACAAATAACTTTGACCCATCAAATTTAATAGAAGAGGGATCACAAGGACAGCTATATAAAGGTTGGCTCAGAGATGGTTCAGTGGTCCTAGTTAATTGTGTTAAAATAAGGCAGAAAGGTCTCCCCCACAGCATCATGCAGCAAATAGAGGTATTACCCAATTTGAGGCACAGGCACATGGTGAGTGTTCTAGGACACTGTATCATTACTGAACAGGAACATCCCCAAACAACAAGCACAGTCTTCATCGTATTTGAGCACATCTCAAATGTGTCGTTAAGGGATCAACTTGCAGATGGGAGAAAGAGGGAAATGCTGAAATGGCCACAAAGAATGGCAATGAGCATAGGCATTGCAAGAGGAGTCCAGTTCTTACACACAGGAGTTGCTCCTGGCATATATGGCAACAATTTAAAGATTGAGAACATTCTGTTGGATGATAGTCTCAATGCAAAAGTTAGTAGATACAGTATTCCATTGCCATCCAAGAGTGCACATAATGAACACATTGCCACCAATCATATGGGCAGCACAAATAATGCAGAAAAGGAAGACATCTATCAGCTGGGCGTTATTCTTCTTGAAGTTATCACTGGAAAAGAAATTGCTTCCCCTAGTGAAATAGAGGAGATGAAGGATGAGCTGGAGAATGGTTCATCAGAAGCAACATCAGTACTTAAAAGTGTAATTGATCCTTCACTGCGAGGAACTTATGCATATGAATCAATGAAGACTGCAATTCATATTACCATCAACTGTCTCTCCAAGGTCTCTAGCCAGCGTCCTTCAATAGAGGATGTTCTTTGGAATTTACAATACTCAATGCAAGTTCAAGAGTCATGGACCAGCAGTGGAAACCTCAGCACAAAGTTGTAA 2208 0.4094 MKNLRVCFTYFFLAIVLVLLTPSSVAQLSTSENRILFQVQKLLEYPQALQGWTRWTNLCFLPPSSSLKIVCSNGHLTELTIIGNKTSPSSHNPQAGSWTSLQTLSGKFSIDSFFTVMTKLSNLKVLSLVSLGLWGPLPSKINRFWSLEVLNISSNFIYGEIPPSISSMMNLRSLVLVNNLFNGSVPDLQRLTSLEELNLGGNKLGPEFPLVGKNLVTIILRNNSLRSRIPPEIEHFDKLQVFDVSSNDVFGNIPSFFMSMPSLHSLNLAANHLSGNLSVNKACSSSLTFVDISHNLLVGKLPACLGSMSSKATVLYSGNCFSTKSLNNQHPSSFCKREGALAVKPPARKPQNDSNSGAKLGVVIGIIGGAVVIAGLLVFLIVFIFRKTNGERSHHKMDKYVANKYSASASPGPNGTRHIPQAMKQAALGLPPYRIFTSEEIEDATNNFDPSNLIEEGSQGQLYKGWLRDGSVVLVNCVKIRQKGLPHSIMQQIEVLPNLRHRHMVSVLGHCIITEQEHPQTTSTVFIVFEHISNVSLRDQLADGRKREMLKWPQRMAMSIGIARGVQFLHTGVAPGIYGNNLKIENILLDDSLNAKVSRYSIPLPSKSAHNEHIATNHMGSTNNAEKEDIYQLGVILLEVITGKEIASPSEIEEMKDELENGSSEATSVLKSVIDPSLRGTYAYESMKTAIHITINCLSKVSSQRPSIEDVLWNLQYSMQVQESWTSSGNLSTKL 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium385g00005 735 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 532 731 - -
Vium385g00005 735 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 74 716 - -
Vium385g00005 735 ProSiteProfiles Protein kinase domain profile. 448 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium385g00005 735 Pfam Protein kinase domain 454 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium385g00005 735 SUPERFAMILY L domain-like 29 322 - -
Vium385g00005 735 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 421 521 - -
Vium385g00005 735 Gene3D Ribonuclease Inhibitor 29 212 IPR032675 -
Vium385g00005 735 Gene3D Transferase(Phosphotransferase) domain 1 532 730 - -
Vium385g00005 735 Gene3D Ribonuclease Inhibitor 213 344 IPR032675 -
Vium385g00005 735 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 29 213 - -
Vium385g00005 735 Gene3D Phosphorylase Kinase; domain 1 415 519 - -
Vium385g00005 735 SUPERFAMILY Protein kinase-like (PK-like) 429 715 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium385g00005 Vium-Chr385 87466 91281 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium385g00005 24 693 Miscellaneous Gene Families AT2G02780 46.542 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vium385g00005 Pkinase 2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium385g00005 - - gmx:100803061 1210.28