Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium385g00003 ATGGGAAGACAGAGTCCTGGAAAATGGATCAGAAACTTGCTTCTGGGGAAGAAATCGTCGTCAAAGTCAAAGTCTTCAAGAGAGAAAGATATTTATAAACCTTCAAGTACCAAGGATGTTCTGGTGGTGTCTTCGGAGACATCCATGTCTTCTTCCATATCTGGTGCAAATGCTATTAAAGGAATGCTATCAGAAAAGGAAGTAGTTAGTGTATCATCAAATGATGGGATAATTCTTTCAACTGAAGATGAGCTTGCCAATGGACAATCTCATGATAATTTTTATTCTGAGGACCGTAATGAGAAAAGCAGGCTAATAAAAACAGCAATAACAACAATTCAGGCAGCAATTAGAGGCTATCAGGCGCGAGGGACATATAAAACTGTAAAAGATATCATTCCACTGCAAGCTTATATTCGTGGCCAGTTGGTTCGAAGACAAGCTATTTCTGCTTTGTATTGTGTGAAGTCAATAGTAAGATTTCAAGCATTGGCCCGTGGTTACAAGGTTAGGCACTCTGATATTGGCCTTGCAGTCCAGAAACTTTTGAAGGATACTAAATTCTCGAAATCTACTGGAGTAGTTACATCTACACAGGCAGTGAAGGTCTCAGATAAGACCTTTGCTCACAAGCTTCTGATTTCATCACCCTATGCTGTTTCTCTACGTCTCAAATATAATACTGGTGAACCTAACTTGGTTTCGGAATGGCTTGGCCGTTGGACGAAATCACACTTTTGGGTTCCTCTTCAAGAAGCGCAGAGATCTGATTCAGTGTCTGATAAGAAAAATGGAAGTTCTCAAAGTGTAGAAACTAATAAGGGGCAAGTTAAAAAAAATGCCAGGAAAGGACCTCATGATTTAGTCTCAGATTCCAACAAACATAAACGGTATCCAAAAAAGAATTCAAACCCCGCATTGCATTCAGCTAAGGAACATTCACCAAAGGAACTTGAGAAAAGGAGTTCTAAAACATCTCAAATTCAGAATGTTTCTGATAAGTCGGAGGCTTCTGATGAGAAGAGAAGACTCATGGTAAGAAAAGTTTTAGATCATACAAAAGTCAATGATGTTCCAGAGGAGGATGCTGGTGCTTCATCAGAGAAGATGAAATATTTGGCAGTGTCAAAGTCAGAAGAGTGTGATCTTGGGAAAAGTCTTATACAGCAAGCACAAGAGCATGATAATAATGAGCCATGTAACGGTACTAATCCCTTGCAGCCTAGTTTGATGAATAGTAAAGATGGAGGAGTGATTGAGGAGTTGAATGATGTGAAGAGTAAGAATTTCCAGAGAAGAGCTTCCCTGCCTGCTAATTTTACAGATCTTGAAAATGTGTTGCATGATAACACTCCAAGACTTCCAAGTTACATGGCTCCCACTGAATCTACAAAAGCTAAGCTAAGAGGACAGTGCTCTCCACGGTCTGTTAGTGATCTGGCAGATGTAAGCAGTATAACTCGCAGGCTTTCGCTTTCATCTTCGCTTAGTGTCAAGCTAGGTTCATTCTCTCCACGATCAGATAGATTGGCTGCCTTGACCAACAAGATAAAGACTGACAGATCTCTATCATCTTCAAGGGATGGAACTCATAAGTTGAATCAACCTCAGTGGAGAAGGTGA 1623 0.4023 MGRQSPGKWIRNLLLGKKSSSKSKSSREKDIYKPSSTKDVLVVSSETSMSSSISGANAIKGMLSEKEVVSVSSNDGIILSTEDELANGQSHDNFYSEDRNEKSRLIKTAITTIQAAIRGYQARGTYKTVKDIIPLQAYIRGQLVRRQAISALYCVKSIVRFQALARGYKVRHSDIGLAVQKLLKDTKFSKSTGVVTSTQAVKVSDKTFAHKLLISSPYAVSLRLKYNTGEPNLVSEWLGRWTKSHFWVPLQEAQRSDSVSDKKNGSSQSVETNKGQVKKNARKGPHDLVSDSNKHKRYPKKNSNPALHSAKEHSPKELEKRSSKTSQIQNVSDKSEASDEKRRLMVRKVLDHTKVNDVPEEDAGASSEKMKYLAVSKSEECDLGKSLIQQAQEHDNNEPCNGTNPLQPSLMNSKDGGVIEELNDVKSKNFQRRASLPANFTDLENVLHDNTPRLPSYMAPTESTKAKLRGQCSPRSVSDLADVSSITRRLSLSSSLSVKLGSFSPRSDRLAALTNKIKTDRSLSSSRDGTHKLNQPQWRR 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium385g00003 540 Pfam IQ calmodulin-binding motif 156 171 IPR000048 GO:0005515
Vium385g00003 540 Pfam IQ calmodulin-binding motif 135 147 IPR000048 GO:0005515
Vium385g00003 540 Pfam IQ calmodulin-binding motif 109 123 IPR000048 GO:0005515
Vium385g00003 540 MobiDBLite consensus disorder prediction 21 35 - -
Vium385g00003 540 PANTHER IQ-DOMAIN 5-RELATED 1 494 - -
Vium385g00003 540 MobiDBLite consensus disorder prediction 16 36 - -
Vium385g00003 540 SMART iq_5 153 175 IPR000048 GO:0005515
Vium385g00003 540 SMART iq_5 105 127 IPR000048 GO:0005515
Vium385g00003 540 SMART iq_5 128 149 IPR000048 GO:0005515
Vium385g00003 540 MobiDBLite consensus disorder prediction 306 323 - -
Vium385g00003 540 MobiDBLite consensus disorder prediction 517 540 - -
Vium385g00003 540 Pfam Protein of unknown function (DUF4005) 449 510 IPR025064 -
Vium385g00003 540 ProSiteProfiles IQ motif profile. 106 134 IPR000048 GO:0005515
Vium385g00003 540 MobiDBLite consensus disorder prediction 253 275 - -
Vium385g00003 540 ProSiteProfiles IQ motif profile. 130 157 IPR000048 GO:0005515
Vium385g00003 540 MobiDBLite consensus disorder prediction 253 342 - -
Vium385g00003 540 MobiDBLite consensus disorder prediction 276 298 - -
Vium385g00003 540 Gene3D - 103 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium385g00003 Vium-Chr385 69892 74413 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium385g00003 1 540 IQD Protein Family AT1G14380 31.544 9.81e-58 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium385g00003 - - vun:114179925 805.438