Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3859g00001 ATGGCTTCCTATAACATTTTCTTCCTCTCTATCCTCATTAGCTTCCTGAGTTTTGCAACTACTCAGGCACAGTCCGACCCTGTCTATTTATACCACAATTGCTCCGGGGGTAACAGTACCGATGGCAGCACCTTCCAATCCAATCTCAAGACTCTATTCTCCACCTTATCAGATAAAGCCATCGACAGCAACGGATTCTACAACAACACAGTCTATGGAGAAAACCCCTCGGACTCCGTCTTTGGACTTTTCATGTGCAGGGGTGACGTCCCTTCTCAGCTTTGTCAACAATGTGTCCAAAATGCAACCCAGCGATTATCCTCAGAATGCTCCCTGGCTAAGCAAGCTGTGATTTGGTACGATGAGTGCACCGTTCGTTACTCCAACTACTCATTCTTCTCCACTTTCTCCAGCAGACCAAGAGTTGGCCTGTTGAACACTGCTAATATCTCAAACCAGGAAAGTTTCATGAATTTATTGTTTCAGACCATCAACGAAACTGCAGATGCCGCCGCTGCTGCTGCTGTTAACAAGTTTGCAACAAGGACAGCAAATATTTCTCGGTTTCAGAGCCTTTATTGTCTGGCTCAGTGTACTCGGGACCTGTCACCCAGTGATTGCAGAAGCTGTCTGAGTGGAGTGATAGACGACCTTCCATGGTGCTGCCAAGGGAAGCAAGGTGGGAGAGTTCTGTATCCAAGCTGCAACGTTAGGTATGAGCTTTACCCTTTCTATCGCTCCACACCTGAAGATTCACAGTTATCAGAAGATCTAATTTATCTAAATCACATTTGCTCAAGTAATGTAACTGCTGACAGCGATTTCAAAATACATCTCAGCACCCTTCTCTCTTACATGTCTTCCAATGCCACATACCAAATGGATTATAAGGATGTTGTTGAGGACACTGTGTATGGCCTCTTCATGTGCCGAGGTGACCTTCCCTCTCCTCTCTGTCATCAGTGTGTCCTCAACGCAACCCACACAATATCTGCAGAGTGTAATTCGTTTCAAGAGGCTGTAATTTGGTACAGCCACTGCATGCTTCGCTATTCCTATCGTCATTTCTTCTCCCAAGTTGAAAAGAGTCCACCTTTTCAAATGTTGAGTCTTATCAATACCTTCAACGATGTTCAGCAGCAAAGCTTGTTCACATACACATTATCAACAACGTTGTATAATCTTTATGAGGCAGCGAAGCGCAGTACAGAGAGATATGTGACTAAATCTTCACTAATTGATGAGTCAGAAACCCTTTATGTTCTTGCTCAATGTACGCAGGATTTGTCTGGTGATAATTGCAGCCTATGCCTGGAAGATATAAATAAAAACATGCCATTCGCTCAACTGGGAAACACAGGGGGAAGAGTTCTGTATCCGAGTTGCAATCTCAGATATGAATTTTTCAAATTTTACAGGGATCCTCCATGGCAGACGCCTGGTAATTCTTCTCCACCACTCCTTAAAGAGTATAATGAAAAAACAAAAAGACAATTACGAACAATTATCTCGATTGTTCTATCTATTATTGTTTCAGTGACACTCTTGATCTTCGTCTACTATTTGATAAAGAGAAAAGCAAGAAAGAGTGTTAAGTCTATTCTTAGAGAAAATTTTGGTTATGAAAGTGTCACTTTAGAGCCATTGCAATTCAGTTTCTCAATAATTAAAGCAGCTACCAACAATTTTTCAAATGAGAATAGGATTGGAAAAGGTGGATTTGGAGAAGTTTACAAGGGTATTCTTTTTGATGGACGACAAGTAGCTATAAAGAAGCTTTCAAAAAGTTCTAAACAAGGAGTACATGAGTTCAAGAATGAAGTTTTATTGATAGCCAAGCTTCAACATAGAAATCTTGTGACATTCATTGGATTTTGTCTTGAAGAAGAACAGAAAATACTTATATATGAATATGTGCCCAACAAGAGTCTTGACTACTTTTTATTTGATTCTCAAAAAGCACATTTGTTAAGTTGGTCACAACGTTATGAAATTATTACAGGAGTTGCTCGAGGAATCCTTTATTTACATGAACATTCTCGACTTAAAGTTATACATCGTGATCTTAAGCCTAGTAATATTTTATTAGATGAAAATATGATTCCAAAAATTTCAGACTTTGGTCTTGCCAGAATTATTGAAATAAATCAAGACGAAGGGAGTACAGGGAGAATTGTTGGAACATATGGTTATATGTCTCCAGAATATGCTATGTTTGGACAATTTTCAGAAAAATCAGATGTTTTTAGCTTCGGAGTTATGGTTATAGAGATTGTTACTGGAAAAAAGAATTCAACTTCTTATGATCAACCACACGAAGTTGCTAATAGCCTTTTGAGTTATGTATGGAGACAATGGAGGGATAAGACAATATTAAACATATTAGACCCAAGTATTAAAGAAAAATATTCAGAACAGGAAGTTTCTATATGCATTCAAATTGCTTTATTATGTGTGCAACAAAATCCTCATGCGAGACCATCAATGGTGAAGGTTGTTTCATATTTTAGCAATCATTCAGTTGAATTACCAAGACCAGAGGAACCCACATTTTTCTTGCATGGTACAATGGATTCAAAAGCTCTTAGGCAAGAATCAAGTTATGGACATTCTACAAGCGGTTGCAGTCCATTCTCAGTTAATGAAATGTCAACTAGTCAATTTCTTCCTCGATAG 2676 0.3898 MASYNIFFLSILISFLSFATTQAQSDPVYLYHNCSGGNSTDGSTFQSNLKTLFSTLSDKAIDSNGFYNNTVYGENPSDSVFGLFMCRGDVPSQLCQQCVQNATQRLSSECSLAKQAVIWYDECTVRYSNYSFFSTFSSRPRVGLLNTANISNQESFMNLLFQTINETADAAAAAAVNKFATRTANISRFQSLYCLAQCTRDLSPSDCRSCLSGVIDDLPWCCQGKQGGRVLYPSCNVRYELYPFYRSTPEDSQLSEDLIYLNHICSSNVTADSDFKIHLSTLLSYMSSNATYQMDYKDVVEDTVYGLFMCRGDLPSPLCHQCVLNATHTISAECNSFQEAVIWYSHCMLRYSYRHFFSQVEKSPPFQMLSLINTFNDVQQQSLFTYTLSTTLYNLYEAAKRSTERYVTKSSLIDESETLYVLAQCTQDLSGDNCSLCLEDINKNMPFAQLGNTGGRVLYPSCNLRYEFFKFYRDPPWQTPGNSSPPLLKEYNEKTKRQLRTIISIVLSIIVSVTLLIFVYYLIKRKARKSVKSILRENFGYESVTLEPLQFSFSIIKAATNNFSNENRIGKGGFGEVYKGILFDGRQVAIKKLSKSSKQGVHEFKNEVLLIAKLQHRNLVTFIGFCLEEEQKILIYEYVPNKSLDYFLFDSQKAHLLSWSQRYEIITGVARGILYLHEHSRLKVIHRDLKPSNILLDENMIPKISDFGLARIIEINQDEGSTGRIVGTYGYMSPEYAMFGQFSEKSDVFSFGVMVIEIVTGKKNSTSYDQPHEVANSLLSYVWRQWRDKTILNILDPSIKEKYSEQEVSICIQIALLCVQQNPHARPSMVKVVSYFSNHSVELPRPEEPTFFLHGTMDSKALRQESSYGHSTSGCSPFSVNEMSTSQFLPR 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3859g00001 891 ProSiteProfiles Gnk2-homologous domain profile. 366 471 IPR002902 -
Vium3859g00001 891 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 258 355 - -
Vium3859g00001 891 ProSiteProfiles Protein kinase domain profile. 563 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3859g00001 891 Pfam Protein tyrosine and serine/threonine kinase 566 834 IPR001245 GO:0004672|GO:0006468
Vium3859g00001 891 FunFam Cysteine-rich receptor-like protein kinase 25 140 244 - -
Vium3859g00001 891 ProSitePatterns Serine/Threonine protein kinases active-site signature. 684 696 IPR008271 GO:0004672|GO:0006468
Vium3859g00001 891 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 524 638 - -
Vium3859g00001 891 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 27 131 - -
Vium3859g00001 891 ProSiteProfiles Gnk2-homologous domain profile. 27 132 IPR002902 -
Vium3859g00001 891 ProSiteProfiles Gnk2-homologous domain profile. 138 244 IPR002902 -
Vium3859g00001 891 SMART serkin_6 563 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3859g00001 891 FunFam cysteine-rich receptor-like protein kinase 10 639 843 - -
Vium3859g00001 891 CDD STKc_IRAK 569 836 - -
Vium3859g00001 891 Gene3D Transferase(Phosphotransferase) domain 1 639 844 - -
Vium3859g00001 891 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 185 886 - -
Vium3859g00001 891 Gene3D - 258 356 IPR038408 -
Vium3859g00001 891 Gene3D - 141 244 IPR038408 -
Vium3859g00001 891 Gene3D - 367 471 IPR038408 -
Vium3859g00001 891 Gene3D - 26 132 IPR038408 -
Vium3859g00001 891 ProSitePatterns Protein kinases ATP-binding region signature. 569 592 IPR017441 GO:0005524
Vium3859g00001 891 Pfam Salt stress response/antifungal 265 352 IPR002902 -
Vium3859g00001 891 Pfam Salt stress response/antifungal 379 467 IPR002902 -
Vium3859g00001 891 Pfam Salt stress response/antifungal 34 130 IPR002902 -
Vium3859g00001 891 Pfam Salt stress response/antifungal 149 242 IPR002902 -
Vium3859g00001 891 ProSiteProfiles Gnk2-homologous domain profile. 257 356 IPR002902 -
Vium3859g00001 891 SUPERFAMILY Protein kinase-like (PK-like) 545 860 IPR011009 -
Vium3859g00001 891 Gene3D Phosphorylase Kinase; domain 1 524 638 - -
Vium3859g00001 891 FunFam Cysteine-rich receptor-like protein kinase 25 367 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3859g00001 Vium-Chr3859 18206 24807 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3859g00001 254 891 Receptor kinase-like Gene Family AT4G05200 42.944 8.85e-173 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium3859g00001 PK_Tyr_Ser-Thr 3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3859g00001 - - gmx:100798426 1186.79