Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3852g00007 ATGGACAAGACAACGTCAACAACAACAACCTCAGACAGAGAAGTCCACGACTTCATGAACGTGGACTCCTTCTCCCAACTACCCTTCATCCGTCCTGCTCCTCTCGCCAAGGAGAAGTCCGCCATTCGTCTCTTCGGCATAGAATTCGCCGGCGGAAACAACACTGCTGTTTCGCCGGAGGACTCTGACTCTGCAGAAACGTTAACCAACACCAACAGTAACAGTAACAACCTTAACTCCTTCGAACTCGATGCTACCAAGGACGATACCACTACCACCACTGTCACCGTTACTGATAACAACGGCGAAACCAGTCGCAGGTTCGAGTGTCACTACTGCTGCCGGAACTTCCCCACCTCCCAAGCCCTCGGCGGTCACCAAAACGCGCACAAACGGGAACGCCAACACGCCAAACGCGCCCACCTTCAGTCAACGATGGTGCACGGAAGCACCTTCTCTGACGCTCACCATGTCTACAATCTCATGAACTACCGCTTTGGTTCCGCTCCGACACCGCCAATGCCGTATCCAACGTGGAACAACGCCCCCGCGTCCACCGCCACCAACACGAGGTTCTACGGAACGACACCGTTTTCTCACAGCCACCACCAGCACCAGCAGCCTATTAACGGAAACCCTTTGGCTCTGTGGCGAATTCCGAGCAATAACCCTAGTTTCAGCCACGAACGGTCGTCGTTGCCGCCTTTGTTCGCGTCGCAGGAGATAACGAACGTGAGAGCCTCGCAGGTTGTGGGATCGTCGGGGTCGCAAAATCGCTACGCGTATGACTCCAAACGCGGAAGTGTGCACGACCATGTGAGTTTGGATCTTCATCTGTAG 840 0.5476 MDKTTSTTTTSDREVHDFMNVDSFSQLPFIRPAPLAKEKSAIRLFGIEFAGGNNTAVSPEDSDSAETLTNTNSNSNNLNSFELDATKDDTTTTTVTVTDNNGETSRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQSTMVHGSTFSDAHHVYNLMNYRFGSAPTPPMPYPTWNNAPASTATNTRFYGTTPFSHSHHQHQQPINGNPLALWRIPSNNPSFSHERSSLPPLFASQEITNVRASQVVGSSGSQNRYAYDSKRGSVHDHVSLDLHL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3852g00007 279 PANTHER ZINC FINGER PROTEIN GIS 1 279 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
Vium3852g00007 279 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Vium3852g00007 279 MobiDBLite consensus disorder prediction 52 82 - -
Vium3852g00007 279 MobiDBLite consensus disorder prediction 55 82 - -
Vium3852g00007 279 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Vium3852g00007 279 SUPERFAMILY beta-beta-alpha zinc fingers 105 136 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3852g00007 Vium-Chr3852 75725 76810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3852g00007 9 279 C2H2 Transcription Factor Family AT2G41940 39.929 1.64e-44 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3852g00007 - - vun:114190818 490.73