Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3852g00001 ATGAGAACTTCGTGGGCAGATTCTGCTGACAACTCAGCCATTGGTTCTGGCAATGGCAATTTCTCGGCTCACCCTCCCCGAGGTGCATATGTGCCTCCGCATCTTCGCAACAGGTCACTGTCGTCGGAGGTTCCTGCAGTGTCACACTCGCCGGCTCCTTTACCGGCGAATGACAGAGGGAATCCTGGTGGTGCAGCTCCTCATCAGGGAGGTGGTTACTTTAAAGCTGATCAAGGGCGGCAACAAGGATATGGTTCTGGTTATCAGACTGGTGGTGGCTGGAATGGTAGAGGGGCGGGGAGGGACCGTGGGAGGCGAGAGGTGAACCCTTTTGAGAATGATGAAGCTGATGATAAATCTCTGGAGCAAGAGAACAGTGGGATTAACTTTGAGGCTTATGATGATATCCCTGTGGAGACTAGTGGGGACAATGTGCCCCCGCCTGTGAATACATTTGCTGAAATAGATTTGGGCGAGGCATTGAATCATAATATACAGAGATGCAAGTATGTGAAACCAACCCCGGTTCAGAGGTATGCCATTCCAATTTCCCTTTCTGGGCGAGACTTGATGGCCTGTGCTCAGACCGGGTCAGGAAAGACAGCTGCCTTTTGCTTCCCTATTATAAGTGGAATAATGAGGGAGCAATATGTTCAAAGGCCACGTGTGGCTAGAACTGCTTTTCCGATGGCACTTATCCTCTCCCCCACACGGGAACTTTCATGTCAGATACACGATGAGGCCAAAAAGTTTTCTTACCAAACAGGTGTGAAAGTGGTGGTTGCTTATGGAGGAGCTCCAATCACACAACAGTTACGGGAGCTTGAGAGAGGAGTTGATATTCTGGTGGCTACTCCAGGAAGATTGGTGGATTTGCTCGAGAGGGCTCGGGTGTCACTACAGATGATAAGGTATTTGGCACTTGATGAGGCAGATCGGATGCTGGACATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCGGGCATGAGACAGACACTGTTGTTTAGTGCCACATTTCCAAAAGAGATACAGAGACTTGCATCAGATTTTCTTTCAAATTATGTGTTTCTGGCTGTTGGAAGGGTCGGTTCAAGTACTGATCTAATTGCTCAAAGAGTAGAATATGTTCTTGAGTCAGACAAGAGAAGCCATCTCATGGATCTTCTTCACGCTCAGAGGGAAAATGGAATTTACGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACGAAGAAAGGAGCTGATGCTTTGGAACACTGCTTGTGTGTTAATGGATTTCCTGCAGCTAGCATTCATGGTGACAGAACACAACAAGAAAGAGAACTAGCATTGAGATCGTTCAAGACTGGAAACACACCAATTCTAGTGGCAACGGATGTTGCAGCACGTGGTCTGGACATCCCTCGGGTGGCACATGTGGTAAATTTTGATCTTCCGAATGACATTGATGATTACGTGCACCGAATAGGAAGAACGGGGCGAGCTGGTAAAATGGGACTAGCAACGGCCTTTTTCAATGAAAGTAATGTATCCTTGGCCAAACCATTGGCTGATCTGATGCAAGAGGCTAATCAAGAAGTTCCTGCCTGGCTCACCCGTTATGCGGCAAGGGCTGCCTACAGTGGTGGCAACAGAAACAGGAGGTCAGGGGGATCCCGTTTTGGTGGTCGTGATTTTAGGAGGGAGGGCTCATTTAATAAATCAACAGAGTACTATGGCGGTGGAAACGGTGGTGGAGCTGCTGGAGGATATGGCAATTACGGTGGAGGAGGAGGGTACGGTCAAGGTGTGACAAGTGCTTGGGATTAG 1833 0.4828 MRTSWADSADNSAIGSGNGNFSAHPPRGAYVPPHLRNRSLSSEVPAVSHSPAPLPANDRGNPGGAAPHQGGGYFKADQGRQQGYGSGYQTGGGWNGRGAGRDRGRREVNPFENDEADDKSLEQENSGINFEAYDDIPVETSGDNVPPPVNTFAEIDLGEALNHNIQRCKYVKPTPVQRYAIPISLSGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRVARTAFPMALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLSNYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENGIYGKQGLTLVFVETKKGADALEHCLCVNGFPAASIHGDRTQQERELALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNESNVSLAKPLADLMQEANQEVPAWLTRYAARAAYSGGNRNRRSGGSRFGGRDFRREGSFNKSTEYYGGGNGGGAAGGYGNYGGGGGYGQGVTSAWD 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3852g00001 610 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 181 365 IPR014001 -
Vium3852g00001 610 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 120 543 - -
Vium3852g00001 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 519 IPR027417 -
Vium3852g00001 610 MobiDBLite consensus disorder prediction 1 123 - -
Vium3852g00001 610 Pfam Helicase conserved C-terminal domain 390 504 IPR001650 -
Vium3852g00001 610 MobiDBLite consensus disorder prediction 99 123 - -
Vium3852g00001 610 Gene3D - 368 548 IPR027417 -
Vium3852g00001 610 Gene3D - 105 367 IPR027417 -
Vium3852g00001 610 Pfam DEAD/DEAH box helicase 174 354 IPR011545 GO:0003676|GO:0005524
Vium3852g00001 610 MobiDBLite consensus disorder prediction 1 19 - -
Vium3852g00001 610 SMART ultradead3 169 380 IPR014001 -
Vium3852g00001 610 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 150 178 IPR014014 GO:0003724
Vium3852g00001 610 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 392 543 IPR001650 -
Vium3852g00001 610 FunFam Probable ATP-dependent RNA helicase DDX4 113 367 - -
Vium3852g00001 610 MobiDBLite consensus disorder prediction 550 569 - -
Vium3852g00001 610 SMART helicmild6 423 504 IPR001650 -
Vium3852g00001 610 CDD SF2_C_DEAD 377 513 - -
Vium3852g00001 610 CDD DEADc_DDX3_DDX4 151 371 IPR044763 GO:0003724|GO:0005524
Vium3852g00001 610 FunFam ATP-dependent RNA helicase RhlB 368 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3852g00001 Vium-Chr3852 10125 17704 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3852g00001 134 536 Eukaryotic Initiation Factors Gene Family AT3G19760 31.034 5.61e-61 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3852g00001 K11594 - gmx:100818326 999.964