Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3848g00005 ATGTATTTTCAGTATGATATTGAAATTTTAAACAATTTATGCTTGTATTGCATTTCAATCTTTTACAGCATTGCTGTTTACAAGGCATTATACAAGAGCTTTGGAGGATTTGCTGCAGATGTCGTTGCAGCAATTGACCAGGCAGCTCAGGATGGGGTTGACATAATAAGCTTGTCAATTACTCCTAATAGACGTCCTCCTGGTGTGGCAACTTTCTTCAATCCAATAGACATGGCTCTGCTGTCGGCTGTGAAGGCCGGTATTTTTGTCGTGCAAGCAGCAGGAAATACTGGACCATCACCAACAAGCATGTTCTCCTTCAGTCCATGGATCTTTACTGTTGGTGCTGCCTCTCATGATCGGGTTTATAGCAACTCCATATTTCTTGGAAATAATGTGACCATACCTGGAGTTGGTCTTGCTCCTGGTACAGATGAAAGCAAACTTTATAAACTGATTCATGCACATCATGCATTGAGCAATAATGACACAACGGTTGCTGATGATATGTATGTTGGTGAGTGCCAAGATGCAAATAAGTTCAACAAGGATTTGATCAAGGGGAACCTCTTAATGTGCAGCTATTCAATTCGATTTGTGCTGGGACTCTCCACCATCAAAAGAGCCTCAGAAACAGCCAAAAATCTTAGTGCAGCTGGTGTTGTCTTCTATATGGATCCCTATGTGATTGGTTTTCAGCTTAACCCTGTTGCAATGAAAATGCCAAGCATAATAATTGCTTCCACTAATGATTCCAAGATTTTAATGCAATACTACAATTCTTCATTGGAAATAGATGCCGTTTCAAAGAAAATTGTTAAATTTGGGGCTGCTGCCAGTATCTGTGGTGGACTAAAAGCGAATTATGGCAGTGCTGCACCCAAGGTAATGTATTACTCTGCCAGAGGACCAGATCCACAAGACAGTCTTCCTCATGAAGCAGACATTTTGAAACCCAACTTGTTAGCTCCTGGAAGTTTTATATGGGCTGCTTGGAGTTCTGTTGCTGCTGATTCCGTTGAGTTCCTAGGTGAGAATTTTGCATTGATGTCTGGCACAAGCATGGCTGCTCCTCATGTTGCTGGTCTTGCTGCACTAATTAAGCAAAAGTTCCCGAGTTTTAGTCCTGCAGCCATTGGATCTGCACTTTCCACTACAGCTTCTCTGTATGACAAGAGTGGTGGGCCAATAATGGCTCAACGATCGTATGCCTCTCCTGAACTAAACGAGTCTCCAGCAACTCCTTTTGACATGGGAAGTGGTTTTGTGAATGCAAGTGGAGCACTGAATCCTGGTTTGATTTTTGATTCCGGTTATGATGATTATATGTCATTTCTATGTGGCATCAATGGTTCATATCCTGTGGTGCTAAACTACACTGGTCAAAATTGTGGACTCTACAATTCCAGTGTGTATGGTCCTGATCTGAACCTGCCCTCAATCACTATATCAAAGCTGAACCAATCTAGAATAGTGCAGAGGACAGTCAAAAACACTGCTCAAAATGAATCATACAGTGTTGGTTGGACTGCTCCTTATGGAGTTTCATTGAAAGTGTTTCCAACTCACTTCAGTATTGGCAGTGGTGAGAAGCAGATATTGTCTGTGCTCTTGAATGCAACAGTTAACAGCTCTCTTTCCAGCTTTGGGAGAATTGGGCTGTTTGGGAATCAAGGTCATGTGCTAAACATTCCAATTTCAATCATGGTTAAAATCTCATCTAACACCACTACAAGTTAA 1740 0.4167 MYFQYDIEILNNLCLYCISIFYSIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGVATFFNPIDMALLSAVKAGIFVVQAAGNTGPSPTSMFSFSPWIFTVGAASHDRVYSNSIFLGNNVTIPGVGLAPGTDESKLYKLIHAHHALSNNDTTVADDMYVGECQDANKFNKDLIKGNLLMCSYSIRFVLGLSTIKRASETAKNLSAAGVVFYMDPYVIGFQLNPVAMKMPSIIIASTNDSKILMQYYNSSLEIDAVSKKIVKFGAAASICGGLKANYGSAAPKVMYYSARGPDPQDSLPHEADILKPNLLAPGSFIWAAWSSVAADSVEFLGENFALMSGTSMAAPHVAGLAALIKQKFPSFSPAAIGSALSTTASLYDKSGGPIMAQRSYASPELNESPATPFDMGSGFVNASGALNPGLIFDSGYDDYMSFLCGINGSYPVVLNYTGQNCGLYNSSVYGPDLNLPSITISKLNQSRIVQRTVKNTAQNESYSVGWTAPYGVSLKVFPTHFSIGSGEKQILSVLLNATVNSSLSSFGRIGLFGNQGHVLNIPISIMVKISSNTTTS 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3848g00005 579 Gene3D - 120 289 - -
Vium3848g00005 579 Gene3D - 446 571 - -
Vium3848g00005 579 Gene3D Peptidase S8/S53 domain 23 442 IPR036852 GO:0004252|GO:0006508
Vium3848g00005 579 ProSiteProfiles Serine proteases, subtilase domain profile. 1 429 - -
Vium3848g00005 579 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 23 566 IPR045051 -
Vium3848g00005 579 Pfam Subtilase family 23 391 IPR000209 GO:0006508|GO:0008236
Vium3848g00005 579 CDD PA_subtilisin_like 129 262 - -
Vium3848g00005 579 SUPERFAMILY Subtilisin-like 21 433 IPR036852 GO:0004252|GO:0006508
Vium3848g00005 579 ProSitePatterns Serine proteases, subtilase family, serine active site. 352 362 IPR023828 -
Vium3848g00005 579 Pfam Fibronectin type-III domain 475 568 IPR041469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3848g00005 Vium-Chr3848 20175 24843 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3848g00005 24 574 Subtilisin-like Serine Gene Family AT4G20430 70.962 0.0 804
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3848g00005 - - vum:124835791 1127.46