Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3848g00004 ATGAAGGCAGAGAAACTATCAAGGAGCAGTGAAGTGTCCAATGTGGTTTTGGATTTTTCTGTAAGGACTGCGACTACACATACGCCACAGTTTTTGGGTCTGCCACAGGGAGCATGGTTTCAAGAGGGAGGGTTTGAAACTGCTGGAGAAGGAGTTGTTATTGGGTTTGTTGACACTGGCATAGATCCAACACATCCTAGTTTTGGTGATAGTAAATCTAATCATCCATATCCTGTTCCTGGTCATTTTTCTGGCATCTGTGAGGTTACTCGCGACTTTCCATCTGGTTCTTGCAATAGGAAGCTTGTTGGGGCCCGCCACTTTGCTGCTTCAGCCATAACCAGAGGAATATTTAATTCAACTCAGGACTATGCTTCTCCCTTTGATGGTGATGGTCATGGCACGCATACAGCAGCTGTTGCAGCAGGAAACCATGGGATTCCAGTCATTGTTGCTGGACATCACTTTGGAAATGCTAGTGGGATGGCTCCTCGTTCACACATTGCTGTTTACAAGGCATTATACAAGAGCTTTGGAGGATTTGCTGCAGATGTCGTTGCAGCAATTGACCAGGCAGCTCAGGATGGGGTTGACATAATAAGCTTGTCAATTACTCCTAATAGACGTCCTCCTGGTGTGGCAACTTTCTTCAATCCAATAGACATGGCTCTGCTGTCGGCTGTGAAGGCCGGTATTTTTGTCGTGCAAGCAGCAGGAAATACTGGACCATCACCAACAAGCATGTTCTCCTTCAGTCCATGGATCTTTACTGTTGGTGCTGCCTCTCATGATCGGGTTTATAGCAACTCCATATTTCTTGGAAATAATGTGACCATACCTGGAGTTGGTCTTGCTCCTGGTACAGATGAAAGCAAACTTTATAAACTGATTCATGCACATCATGCATTGAGCAATAATGACACAACGGTTGCTGATGATATGTATGTTGGTGAGTGCCAAGATGCAAATAAGTTCAACAAGGATTTGATCAAGGGGAACCTCTTAATGTGCAGCTATTCAATTCGATTTGTGCTGGGACTCTCCACCATCAAAAGAGCCTCAGAAACAGCCAAAAATCTTAGTGCAGCTGGTGTTGTCTTCTATATGGATCCCTATGTGATTGGTTTTCAGCTTAACCCTGTTGCAATGAAAATGCCAAGCATAATAATTGCTTCCACTAATGATTCCAAGATTTTAATGCAATACTACAATTCTTCATTGGAAATAGATGCCGTTTCAAAGAAAATTGTTAAATTTGGGGCTGCTGCCAGTATCTGTGGTGGACTAAAAGCGAATTATGGCAGTGCTGCACCCAAGGTAATGTATTACTCTGCCAGAGGACCAGATCCACAAGACAGTCTTCCTCATGAAGCAGACATTTTGAAACCCAACTTGTTAGCTCCTGGAAGTTTTATATGGGCTGCTTGGAGTTCTGTTGCTGCTGATTCCGTTGAGTTCCTAGGTGAGAATTTTGCATTGATGTCTGGCACAAGCATGGCTGCTCCTCATGTTACTGGTCTTGCTGCACTAATTAAGCAAAAGTTCCCGAGTTTTAGTCCTGCAGCCATTGGATCTGCACTTTCCACTACAGCTTCTCTGTATGACAAGAGTGGTGGGCCAATAATGGCTCAACGATCGTATGCCTCTCCTGAACTAAACGAGTCTCCAGCAACTCCTTTTGACATGGGAAGTGGTTTTGTGAATGCAAGTGGAGCACTGAATCCTGGTTTGATTTTTGATTCCGGTTATGATGATTATATGTCATTTCTATGTGGCATCAATGGTTCATATCCTGTGGTGCTAAACTACACTGGTCAAAATTGTGGACTCTACAATTCCAGTGTGTATGGTCCTGATCTGAACCTGCCCTCAATCACTATATCAAAGCTGAACCAATCTAGAATAGTGCAGAGGACAGTCAAAAACACTGCTCAAAATGAATCATACAGTGTTGGTTGGACTGCTCCTTATGGAGTTTCATTGAAAGTGTTTCCAACTCACTTCAGTATTGGCAGTGGTGAGAAGCAGATATTGTCTGTGCTCTTGAATGCAACAGTTAACAGCTCTCTTTCCAGCTTTGGGAGAATTGGGCTGTTTGGGAATCAAGGTCATGTGCTAAACATTCCAATTTCAATCATGGTTAAAATCTCATCTAACACCACTACAAGTTAA 2172 0.4328 MKAEKLSRSSEVSNVVLDFSVRTATTHTPQFLGLPQGAWFQEGGFETAGEGVVIGFVDTGIDPTHPSFGDSKSNHPYPVPGHFSGICEVTRDFPSGSCNRKLVGARHFAASAITRGIFNSTQDYASPFDGDGHGTHTAAVAAGNHGIPVIVAGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGVATFFNPIDMALLSAVKAGIFVVQAAGNTGPSPTSMFSFSPWIFTVGAASHDRVYSNSIFLGNNVTIPGVGLAPGTDESKLYKLIHAHHALSNNDTTVADDMYVGECQDANKFNKDLIKGNLLMCSYSIRFVLGLSTIKRASETAKNLSAAGVVFYMDPYVIGFQLNPVAMKMPSIIIASTNDSKILMQYYNSSLEIDAVSKKIVKFGAAASICGGLKANYGSAAPKVMYYSARGPDPQDSLPHEADILKPNLLAPGSFIWAAWSSVAADSVEFLGENFALMSGTSMAAPHVTGLAALIKQKFPSFSPAAIGSALSTTASLYDKSGGPIMAQRSYASPELNESPATPFDMGSGFVNASGALNPGLIFDSGYDDYMSFLCGINGSYPVVLNYTGQNCGLYNSSVYGPDLNLPSITISKLNQSRIVQRTVKNTAQNESYSVGWTAPYGVSLKVFPTHFSIGSGEKQILSVLLNATVNSSLSSFGRIGLFGNQGHVLNIPISIMVKISSNTTTS 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3848g00004 723 CDD Peptidases_S8_3 24 532 IPR034197 -
Vium3848g00004 723 CDD PA_subtilisin_like 273 406 - -
Vium3848g00004 723 ProSiteProfiles Serine proteases, subtilase domain profile. 29 573 - -
Vium3848g00004 723 Pfam Fibronectin type-III domain 619 712 IPR041469 -
Vium3848g00004 723 PRINTS Subtilisin serine protease family (S8) signature 129 142 IPR015500 -
Vium3848g00004 723 PRINTS Subtilisin serine protease family (S8) signature 495 511 IPR015500 -
Vium3848g00004 723 PRINTS Subtilisin serine protease family (S8) signature 49 68 IPR015500 -
Vium3848g00004 723 Pfam Subtilase family 49 535 IPR000209 GO:0006508|GO:0008236
Vium3848g00004 723 ProSitePatterns Serine proteases, subtilase family, serine active site. 496 506 IPR023828 -
Vium3848g00004 723 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 10 710 IPR045051 -
Vium3848g00004 723 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 54 65 IPR023827 -
Vium3848g00004 723 Gene3D - 590 715 - -
Vium3848g00004 723 SUPERFAMILY Subtilisin-like 24 577 IPR036852 GO:0004252|GO:0006508
Vium3848g00004 723 Gene3D - 264 433 - -
Vium3848g00004 723 Gene3D Peptidase S8/S53 domain 51 586 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3848g00004 Vium-Chr3848 13201 19841 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3848g00004 2 718 Subtilisin-like Serine Gene Family AT4G20430 72.145 0.0 1088
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3848g00004 - - gmx:100796456 1310.82