Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3848g00003 ATGAAGGCAGAGAAACTATCAAGGAGCAGTGAAGTGTCCAATGTGGTTTTGGATTTTTCTGTAAGGACTGCGACTACACATACGCCACAGTTTTTGGGTCTGCCACAGGGAGCATGGTTTCAAGAGGGAGGGTTTGAAACTGCTGGAGAAGGAGTTGTTATTGGGTTTGTTGACACTGGCATAGATCCAACACATCCTAGTTTTGGTGATAGTAAATCTAATCATCCATATCCTGTTCCTGGTCATTTTTCTGGCATCTGTGAGGTTACTCGCGACTTTCCATCTGGTTCTTGCAATAGGAAGCTTGTTGGGGCCCGCCACTTTGCTGCTTCAGCCATAACCAGAGGAATATTTAATTCAACTCAGGACTATGCTTCTCCCTTTGATGGTGATGGTCATGGCACGCATACAGCAGCTGTTGCAGCAGGAAACCATGGGATTCCAGTCATTGTTGCTGGACATCACTTTGGAAATGCTAGTGGGATGGCTCCTCGTTCACACATTGCTGTTTACAAGGCATTATACAAGAGCTTTGGAGGATTTGCTGCAGATGTCGTTGCAGCAATTGACCAGGCAGCTCAGGATGGGGTTGACATAATAAGCTTGTCAATTACTCCTAATAGACGTCCTCCTGGTGTGGCAACTTTCTTCAATCCAATAGACATGGCTCTGCTGTCGGCTGTGAAGGCCGGTATTTTTGTCGTGCAAGCAGCAGGAAATACTGGACCATCACCAACAAGCATGTTCTCCTTCAGTCCATGGATCTTTACTGTTGGTGCTGCCTCTCATGATCGGGTTTATAGCAACTCCATATTTCTTGGAAATAATGTGACCATACCTGGAGTTGGTCTTGCTCCTGGTACAGATGAAAGCAAACTTTATAAACTGATTCATGCACATCATGCATTGAGCAATAATGACACAACGGTTGCTGATGATATGTATGTTGGTGAGTGCCAAGATGCAAATAAGTTCAACAAGGATTTGATCAAGGGGAACCTCTTAATGTGCAGCTATTCAATTCGATTTGTGCTGGGACTCTCCACCATCAAAAGAGCCTCAGAAACAGCCAAAAATCTTAGTGCAGCTGGTGTTGTCTTCTATATGGATCCCTATGTGATTGGTTTTCAGCTTAACCCTGTTGCAATGAAAATGCCAAGCATAATAATTGCTTCCACTAATGATTCCAAGATTTTAATGCAATACTACAATTCTTCATTGGAAATAGATGCCGTTTCAAAGAAAATTGTTAAATTTGGGGCTGCTGCCAGTATCTGTGGTGGACTAAAAGCGAATTATGGCAGTGCTGCACCCAAGGTAATGTATTACTCTGCCAGAGGACCAGATCCACAAGACAGTCTTCCTCATGAAGCAGACATTTTGAAACCCAACTTGTTAGCTCCTGGAAGTTTTATATGGGCTGCTTGGAGTTCTGTTGCTGCTGATTCCGTTGAGTTCCTAGCAGGTGAGAATTTTGCATTGATGTCTGGCACAAGCATGGCTGCTCCTCATGTTACTGGTCTTGCTGCACTAATTAAGCAAAAGTTCCCGAGTTTTAGTCCTGCAGCCATTGGATCTGCACTTTCCACTACAGCTTCTCTGTATGACAAGAGTGGTGGGCCAATAATGGCTCAACGATCGTATGCCTCTCCTGAACTAAACGAGTCTCCAGCAACTCCTTTTGACATGGGAAGTGGTTTTGTGAATGCAAGTGGAGCACTGAATCCTGGTTTGATTTTTGATTCCGGTTATGATGATTATATGTCATTTCTATGTGGCATCAATGGTTCATATCCTGTGGTGCTAAACTACACTGGTCAAAATTGTGGACTCTACAATTCCAGTGTGTATGGTCCTGATCTGAACCTGCCCTCAATCACTATATCAAAGCTGAACCAATCTAGAATAGTGCAGAGGACAGTCAAAAACACTGCTCAAAATGAATCATACAGTGTTGGTTGGACTGCTCCTTATGGAGTTTCATTGAAAGTGTTTCCAACTCACTTCAGTATTGGCAGTGGTGAGAAGCAGATATTGTCTGTGCTCTTGAATGCAACAGTTAACAGCTCTCTTTCCAGCTTTGGGAGAATTGGGCTGTTTGGGAATCAAGGTCATGTGCTAAACATTCCAATTTCAATCATGGTTAAAATCTCATCTAACACCACTACAAGTTAA 2175 0.4331 MKAEKLSRSSEVSNVVLDFSVRTATTHTPQFLGLPQGAWFQEGGFETAGEGVVIGFVDTGIDPTHPSFGDSKSNHPYPVPGHFSGICEVTRDFPSGSCNRKLVGARHFAASAITRGIFNSTQDYASPFDGDGHGTHTAAVAAGNHGIPVIVAGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPPGVATFFNPIDMALLSAVKAGIFVVQAAGNTGPSPTSMFSFSPWIFTVGAASHDRVYSNSIFLGNNVTIPGVGLAPGTDESKLYKLIHAHHALSNNDTTVADDMYVGECQDANKFNKDLIKGNLLMCSYSIRFVLGLSTIKRASETAKNLSAAGVVFYMDPYVIGFQLNPVAMKMPSIIIASTNDSKILMQYYNSSLEIDAVSKKIVKFGAAASICGGLKANYGSAAPKVMYYSARGPDPQDSLPHEADILKPNLLAPGSFIWAAWSSVAADSVEFLAGENFALMSGTSMAAPHVTGLAALIKQKFPSFSPAAIGSALSTTASLYDKSGGPIMAQRSYASPELNESPATPFDMGSGFVNASGALNPGLIFDSGYDDYMSFLCGINGSYPVVLNYTGQNCGLYNSSVYGPDLNLPSITISKLNQSRIVQRTVKNTAQNESYSVGWTAPYGVSLKVFPTHFSIGSGEKQILSVLLNATVNSSLSSFGRIGLFGNQGHVLNIPISIMVKISSNTTTS 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3848g00003 724 CDD PA_subtilisin_like 273 406 - -
Vium3848g00003 724 ProSiteProfiles Serine proteases, subtilase domain profile. 29 574 - -
Vium3848g00003 724 Pfam Subtilase family 49 536 IPR000209 GO:0006508|GO:0008236
Vium3848g00003 724 Gene3D - 264 433 - -
Vium3848g00003 724 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 10 711 IPR045051 -
Vium3848g00003 724 Gene3D Peptidase S8/S53 domain 51 587 IPR036852 GO:0004252|GO:0006508
Vium3848g00003 724 PRINTS Subtilisin serine protease family (S8) signature 49 68 IPR015500 -
Vium3848g00003 724 PRINTS Subtilisin serine protease family (S8) signature 129 142 IPR015500 -
Vium3848g00003 724 PRINTS Subtilisin serine protease family (S8) signature 496 512 IPR015500 -
Vium3848g00003 724 Pfam Fibronectin type-III domain 620 713 IPR041469 -
Vium3848g00003 724 SUPERFAMILY Subtilisin-like 24 578 IPR036852 GO:0004252|GO:0006508
Vium3848g00003 724 CDD Peptidases_S8_3 24 533 IPR034197 -
Vium3848g00003 724 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 54 65 IPR023827 -
Vium3848g00003 724 ProSitePatterns Serine proteases, subtilase family, serine active site. 497 507 IPR023828 -
Vium3848g00003 724 Gene3D - 591 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3848g00003 Vium-Chr3848 13201 19841 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3848g00003 2 719 Subtilisin-like Serine Gene Family AT4G20430 72.045 0.0 1083
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3848g00003 - - gmx:100796456 1306.2