Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3848g00001 ATGGGGAACATTTATCTGGTACATTTGACGGTGGTGGTGGTGGTTTTCCTGGGGGTGTTTTTACCTTGTTTGTGTCAAGGGGATTCAGACGATGATACCACTGCTGTGTATGTTGTTACCCTTAGACATGCTCCTGTTTCTCATTACTATGGTGAGTTGAGAAGAGAAGTTAGTAGCTTCAAAGATGCTGCTCCTGCTCCAGGGAGAACCCAATTTAACAAACCAAGAAGGTATGACAATATTACTAAGACAGATAAGAGATATGGCTCTTACATTTCCCAAGTTCATGATTCTCTGTTGAAGAAAGTGTTAAACGGAGAGAAATATCTGAAGCTCTATAGCTACCATTACCTGATAAATGGATTCGCTGTGCTGGTTACCCAGAAACAGGCAGAGAAACTATCAAGGAGCAGTGAAGTGTCCAATGTGGTTTTGGATTTTTCTGTAAGGACTGCGACTACACATACGCCACAGTTTTTGGGTCTGCCACAGGGAGCATGGTTTCAAGAGGGAGGGTTTGAAACTGCTGGAGAAGGAGTTGTTATTGGGTTTGTTGACACTGGCATAGATCCAACACATCCTAGTTTTGGTGATAGTAAATCTAATCATCCATATCCTGTTCCTGGTCATTTTTCTGGCATCTGTGAGGTTACTCGCGACTTTCCATCTGGTTCTTGCAATAGGAAGCTTGTTGGGGCCCGCCACTTTGCTGCTTCAGCCATAACCAGAGGAATATTTAATTCAACTCAGGACTATGCTTCTCCCTTTGATGGTGATGGTCATGGCACGCATACAGCAGCTGTTGCAGCAGGAAACCATGGGATTCCAGTCATTGTTGCTGGACATCACTTTGGAAATGCTAGTGGGATGGCTCCTCGTTCACAGTAA 888 0.4414 MGNIYLVHLTVVVVVFLGVFLPCLCQGDSDDDTTAVYVVTLRHAPVSHYYGELRREVSSFKDAAPAPGRTQFNKPRRYDNITKTDKRYGSYISQVHDSLLKKVLNGEKYLKLYSYHYLINGFAVLVTQKQAEKLSRSSEVSNVVLDFSVRTATTHTPQFLGLPQGAWFQEGGFETAGEGVVIGFVDTGIDPTHPSFGDSKSNHPYPVPGHFSGICEVTRDFPSGSCNRKLVGARHFAASAITRGIFNSTQDYASPFDGDGHGTHTAAVAAGNHGIPVIVAGHHFGNASGMAPRSQ 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3848g00001 295 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 182 193 IPR023827 -
Vium3848g00001 295 ProSiteProfiles Serine proteases, subtilase domain profile. 157 295 - -
Vium3848g00001 295 Pfam Peptidase inhibitor I9 36 152 IPR010259 -
Vium3848g00001 295 Gene3D Peptidase S8/S53 domain 179 294 IPR036852 GO:0004252|GO:0006508
Vium3848g00001 295 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 23 150 IPR037045 -
Vium3848g00001 295 PRINTS Subtilisin serine protease family (S8) signature 257 270 IPR015500 -
Vium3848g00001 295 PRINTS Subtilisin serine protease family (S8) signature 177 196 IPR015500 -
Vium3848g00001 295 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 105 294 IPR045051 -
Vium3848g00001 295 Pfam Subtilase family 177 287 IPR000209 GO:0006508|GO:0008236
Vium3848g00001 295 SUPERFAMILY Subtilisin-like 115 294 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3848g00001 Vium-Chr3848 3238 5786 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3848g00001 1 294 Subtilisin-like Serine Gene Family AT4G20430 60.265 4.91e-124 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3848g00001 - - vum:124835789 587.03