Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3847g00010 ATGAAGATCTCAATATCAGCCTGCGCCTGCAAGCAAGAGCTGCCCCTAGTAAGTTTCCAAAAGGGGCTAACGATGGAGTCGTTGTTTCATCATCGGAGTAAGGACAAGGTGATAATCATAATGGGAGCCACGGGTACCGGCAAGACGAAGTTGGCCGTAGACGTGGCAAAACACTTCCAACCAGCGGAGATAGTGAACTCCGACAAAATGCAAGTGTACAAGGGCCTCGACATCACCACGAACAAGGTCACTGAAGAAGAGTGTGGCGGGGTCCCACATCACCTGCTTGGCACTGTTGACCCTAATATAAATTTCACCGCCAGCGACTTCTGTCGCCACGCCACATCCGCAATTGATTCCATTGTGGAAAGGAATGGCTTACCCATCATTGCTGGAGGCTCCAATTCTTACTTGGACGCACTCGTGAATCATCACGCAGAGTTTCGGTTAAGGTACAAGTGTTGTTTCCTCTGGGTTGACGTCTCTCTCCCCGTGCTCCATTCCTCTCTTCAGGAACGTGTAGACCGCATGATCGACGCTGGTCAAGTGAGCGAGGTTCGCGAATTCTTCGATCCTCGCGCCGATTACACCCGAGGGATCCGAAGGGCCATTGGGGTGCCCGAATTCGACGACTTCCTACGCGCTGAAGCTTCTGGAACCGAGGACGAGACAACCAGAAAGAGACTTCTGGAGGCTGCCATTGCCAGGATCAAGATCAACAACTGCACGCTCGCCAACCGCCAGATTCAAAAGATTCACCGCCTCCACGGGTTGTGGAAACGGAACATGCACCGCCTCGACGCCACAGAGGTTTTCCTCGGCTCTCGCGACGCCTGGCACGACCACGTGCTCGCCAAGAGCCTGGTCATTCTTCACAAGTTCCTTTTCGAGGAAAAGAAAACGCACGTCCCCGCCGGAATCGTGTCCCCGAAAGACGTAATTGCAGCTGTTTCTGCGCCGTCGGTAGCAATGGCAGCAACCCATTAG 987 0.536 MKISISACACKQELPLVSFQKGLTMESLFHHRSKDKVIIIMGATGTGKTKLAVDVAKHFQPAEIVNSDKMQVYKGLDITTNKVTEEECGGVPHHLLGTVDPNINFTASDFCRHATSAIDSIVERNGLPIIAGGSNSYLDALVNHHAEFRLRYKCCFLWVDVSLPVLHSSLQERVDRMIDAGQVSEVREFFDPRADYTRGIRRAIGVPEFDDFLRAEASGTEDETTRKRLLEAAIARIKINNCTLANRQIQKIHRLHGLWKRNMHRLDATEVFLGSRDAWHDHVLAKSLVILHKFLFEEKKTHVPAGIVSPKDVIAAVSAPSVAMAATH 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3847g00010 328 FunFam Adenylate isopentenyltransferase 5, chloroplastic 163 263 - -
Vium3847g00010 328 Pfam IPP transferase 149 250 - -
Vium3847g00010 328 Pfam IPP transferase 71 145 - -
Vium3847g00010 328 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 163 263 - -
Vium3847g00010 328 Gene3D - 34 295 IPR027417 -
Vium3847g00010 328 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 34 294 IPR039657 -
Vium3847g00010 328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 223 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3847g00010 Vium-Chr3847 147140 149188 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3847g00010 151 301 C2H2 Transcription Factor Family AT2G27760 33.898 3.56e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3847g00010 K10760 - gmx:100812928 563.148