Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3847g00009 ATGACCAAGTCCTCTACTGAAAAAAATGGACTCAAGAAGGGTCCATGGACCCCAGAGGAAGATCAGAAACTCATCGACTACATTCAAAAACATGGACATGGAAAATGGCGAACCCTTCCCAAAAATGCAGGACTACGAAGATGTGGAAAGAGTTGTCGGCTTCGCTGGGCGAACTACTTGAGACCTGATATAAAGAGAGGGAGATTCTCATTCGAAGAAGAAGAAGCCATCATCCAGTTACACAGTGTTTTGGGAAACAAGTGGTCTACAATTGCTGCTAACTTGCCAGGAAGAACAGATAATGAGATCAAGAATTATTGGAACACCCACATCAAGAAAAAGCTTTTCAAGATGGGGATTGATCCTGTGACTCACGCACCACGCCTTGATGTTCTACAACTTGCCTCCATTCTCAACACATCTTTGTTCAATTCATCACCACAATTCAACTACCCTTTTCTTTCAGGAAGATCAGTGATAAACTCCAGCCAGCTGCTAAGTTTGCTTTCCACTCTTCTCTCATGTCAAAGCAGAAACAACCCTGATAATGTATTGAATCATAATAATTTCCACCAAAACGATAACCAACTCTTGCAAAATCAGCCCCAATGTACCCAAATGCAACTTGCTGATACCTTACAAACCTTCCAACCAAACCAACCCCAGGTTTCACTTCAAGAAAACCTTATTGCTAAGTCTAATAATCCATTGAACGTGGATCACCAACTGATGAAAAGTAAATCAGAGAATCAAATCTCTCCAGTTGCTACCTCTTTCACCCACCAAAACACCCTTCCAAATCTGTGGCATTATGACAACATATCAGACTTACAAATTGCCCAATCATCATCAGCTATGCAGTGTTTCTCTTCACCCAAGTTCAACTCTATATTCAACAGTCTCTTGGAAAATCAGAATCTGTGTAACAACGAGGGAATGCCAAATTTCAATTTAAGTTCACTGTTATCGTCAACAACTTCATCTTCCAGCCCAAGTACTTTGAATTCATCATCTTCCACCACATTTGTCAACGGAACCACAGAAGATGAAAGGGACACTTACGGCAGCAGCAACATGCTAATGTACAACATTTCCAATGGCTTGAATGACTCTGGACTTTTGTGA 1125 0.4107 MTKSSTEKNGLKKGPWTPEEDQKLIDYIQKHGHGKWRTLPKNAGLRRCGKSCRLRWANYLRPDIKRGRFSFEEEEAIIQLHSVLGNKWSTIAANLPGRTDNEIKNYWNTHIKKKLFKMGIDPVTHAPRLDVLQLASILNTSLFNSSPQFNYPFLSGRSVINSSQLLSLLSTLLSCQSRNNPDNVLNHNNFHQNDNQLLQNQPQCTQMQLADTLQTFQPNQPQVSLQENLIAKSNNPLNVDHQLMKSKSENQISPVATSFTHQNTLPNLWHYDNISDLQIAQSSSAMQCFSSPKFNSIFNSLLENQNLCNNEGMPNFNLSSLLSSTTSSSSPSTLNSSSSTTFVNGTTEDERDTYGSSNMLMYNISNGLNDSGLL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3847g00009 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Vium3847g00009 374 SMART sant 65 113 IPR001005 -
Vium3847g00009 374 SMART sant 12 62 IPR001005 -
Vium3847g00009 374 CDD SANT 68 111 IPR001005 -
Vium3847g00009 374 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vium3847g00009 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Vium3847g00009 374 FunFam Transcription factor MYB39 68 129 - -
Vium3847g00009 374 CDD SANT 15 60 IPR001005 -
Vium3847g00009 374 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 287 - -
Vium3847g00009 374 Gene3D - 68 115 - -
Vium3847g00009 374 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Vium3847g00009 374 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Vium3847g00009 374 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Vium3847g00009 374 MobiDBLite consensus disorder prediction 327 354 - -
Vium3847g00009 374 FunFam MYB-related transcription factor 12 65 - -
Vium3847g00009 374 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vium3847g00009 374 Gene3D - 12 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3847g00009 Vium-Chr3847 119672 121574 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3847g00009 7 146 MYB Transcription Factor Family AT4G21440 84.286 1.16e-88 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium3847g00009 Myb_DNA-binding 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3847g00009 K09422 - gmx:100820398 573.933