Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3847g00008 ATGGATTTCGATACCGAGTTCTCCATGCTTTCTAAAAGAGATCTGGAAACCATAAGTGATTACTTCAAAATCGAGCACGAATTCATGGCTCCTAGGTCGTTTTACTCATTATCATCCAACGCTCGGCATCGGATGCACGCGGTTTCGATGATAGCTAAGTTCGCTACCACTGAACCTATGGATTCGTACATTCCATATGTTGCTGTGAATTACTTCGATCGCTTTATTTCAACGAATTCGCTTACAGAATTACAAGGGTCTTCTTTACTTGATAAAGTTCGTTTGGTAGCAATATGTTGCTACACACTTTCCGCCAAGATGAGGACAAAGAATTTCCCGCAAAAGCAATTTCTGACGAGAAAAGAAGCTGTTTACAAAACCGAAGTCGTAATGAGAATAGAATTTCGCATTCTCAGCGGACTTGACTGGCGAATGCGATCTATAACTCCCTTTCACTTCCTGGACTACTATTATCCCCCCTTCAAAAGAATCGGTGGTTTTAAACGTCAATGCATTAATGAGATCATAGTCCAGTCTCAAGGAGAGGTCTACTTCGCTCAATTCAAACCTTCTGAAATTGCAATGTCCGCTTTACTGGCTGCTACTTACCTTGGATATTCCTCAAAATTTACCTTAATTGAGGGATCAATTCGCCTTTCGGATGATCTTATGGCCTGTTATCAAGAGATGGTTCAGCTTTGTCGTCATAGGAAAATCAACATAAGTAAAAGTTCTGGAGAAGTTATCTTTCCTGTTCCCTCCTCATCGACAACGGAATCAGAAGAAGGATTAGGAAAAGCAGCTGAATTACGAGTACGAAAACAAAGAAGGAGCTCGCGGATCCAGGTTTTGAACACGGTGTTGGAAAATGATGAAGAAGAAGAAGAAGAAGATGTAGCACTGTTAAACCGCCGAAATCGGAATAGGAACGAGGAAGCGGGGGAGGCATCTAAAGAAGTTGAAGAAGGTAAGAGCGAGGCTGAGAAACTACGAGAGGTGATGGAAAGTGCAGCGAGAGTAGCATCTGGGACCGGAGCAAGACAGGAGAAGGGCGAAGGGAAATCTGAAGAAATGGTAGAAGCTGAGAGCGGAACAAGAGATGACGAGTCCAAGGGGCCCTGTGAAGAAATAGTAGGAGCTGAGAGCAGCAGAGCAAGAGAGGACAAGGGCAAGGGCAAGGCTGTAGAAGAAGCAAGCGAGAATGAGTTGCGAAAAAGACAGATAAAGGGCAAGGGCAAGGCTGTAGATGAAATGTGTGAAACAATATTGAGATCAGAGACAGGTGTAGAGGGTGCACCATTGAGGGCAATGAACTTTCAGGTGCAGTGGCCTGTTATTGTGCGGCAAGGTGAGAGAGTTGACAATATAGAGGCTAGCTTATATGTAGATGAATCCCGAATAACAACTACTCGATGTCCTAGAACAATAAGAGGGAGCGACATCGTTCCACCTCCACTTTCCCACCGTTGTCAGTGCAAAATCATGTAG 1488 0.4402 MDFDTEFSMLSKRDLETISDYFKIEHEFMAPRSFYSLSSNARHRMHAVSMIAKFATTEPMDSYIPYVAVNYFDRFISTNSLTELQGSSLLDKVRLVAICCYTLSAKMRTKNFPQKQFLTRKEAVYKTEVVMRIEFRILSGLDWRMRSITPFHFLDYYYPPFKRIGGFKRQCINEIIVQSQGEVYFAQFKPSEIAMSALLAATYLGYSSKFTLIEGSIRLSDDLMACYQEMVQLCRHRKINISKSSGEVIFPVPSSSTTESEEGLGKAAELRVRKQRRSSRIQVLNTVLENDEEEEEEDVALLNRRNRNRNEEAGEASKEVEEGKSEAEKLREVMESAARVASGTGARQEKGEGKSEEMVEAESGTRDDESKGPCEEIVGAESSRAREDKGKGKAVEEASENELRKRQIKGKGKAVDEMCETILRSETGVEGAPLRAMNFQVQWPVIVRQGERVDNIEASLYVDESRITTTRCPRTIRGSDIVPPPLSHRCQCKIM 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3847g00008 495 Gene3D - 147 236 - -
Vium3847g00008 495 MobiDBLite consensus disorder prediction 305 335 - -
Vium3847g00008 495 Pfam Cyclin, N-terminal domain 25 145 IPR006671 -
Vium3847g00008 495 SUPERFAMILY Cyclin-like 14 145 IPR036915 -
Vium3847g00008 495 MobiDBLite consensus disorder prediction 349 405 - -
Vium3847g00008 495 Coils Coil 285 340 - -
Vium3847g00008 495 Gene3D - 41 146 - -
Vium3847g00008 495 MobiDBLite consensus disorder prediction 305 405 - -
Vium3847g00008 495 SUPERFAMILY Cyclin-like 128 238 IPR036915 -
Vium3847g00008 495 CDD CYCLIN_AtCycD-like_rpt2 148 230 - -
Vium3847g00008 495 PANTHER CYCLINS 19 238 IPR039361 -
Vium3847g00008 495 SMART Cyclin_C_2 148 273 IPR004367 -
Vium3847g00008 495 Pfam Cyclin, C-terminal domain 149 239 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3847g00008 Vium-Chr3847 110134 113180 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3847g00008 14 230 Core Cell Cycle Gene Families AT4G03270 30.213 5.46e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3847g00008 - - var:108332810 858.211