Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3846g00003 ATGCCAATGGCAGTTTCTCATCTGAGCCACTCTCACCAAAATCAACTGAAAACTGAAGACTCACAATTCTCTTTCAAGGAAATTGGAAATGAAGGTCTCACAAAGCGGATTCTCAGAAAAGGAGTCTCTTGGCAAACTCCATTCTCTGGAGATGCAGTGGAAGTTCATTTCAGAGGACATGTTGAGAATGGAGCATCTCTTGAATCCAGTTATGATAAAGGATTCACGTTTCGTTTCAAATTAGGCCAGTGTGAAGTTATCAAAGGATGGGATGAAGGAGTTGCCACCATGAAGAAAGGGGAGAGAGCAATCTTCAAAATACCACCTAACTTGGCATATGGGGAACAAGGTTCTCCTCCATTGGTTCCTCCCAATGCAACTCTCATTTATGAAATTGAAATGCTGTCTTGGAGCACCATAAGGGATTTGACTGGCGATGGAGGAATCATGAAAAAGCTAATACGAGAGGGAGAAGGATGGGCCACTCCCAGAGAAGATGACGAGGTGCTAGTGAAATATGAAGCACGGCTGGAGAATGCGATGCTTGTCTCAAAGTCTGAGGAGGGAGTGGAGTTTAATGTAAGTGATGGCTATCTATGTCCTGCTATGAGTATAGCAGTAAAGACAATGAGAAAGGGCGAAGTGGCAGAACTAGCAGTGAGATTATTTTACGGGCAGAGTAAAAATTCAAATATGACCACTCAGCTAGATGGTGTTTCTCCACCAGATTCTAATTTAACTAGCATCAAGCTTGAACTGGTATCATGGAAAGTTGTTACAGATGTCACAGGAGACAAGAAGATACTGAAAAAGATTAAGAAAGTGGGTGAGGGGTTTGATCGTCCTAACGAGGGATCACAAGTGAAAGTGATATATTTGTGCAAAGGGGAAGATGATATAATTATTGAGAGGAAAGGATCAGAGGAAGAACCTTTTGAGTTTACAACTCAAGAAGAACAAGTACCCGAGGGTCTAGAAAGAGCAATAATGACAATGAAAAAAGCAGAACAAGCTCTTGTAATCGTCCATGCAGAATATTTGTGCGGCTCTAATAATTCACAGGGAAACACAGCAAATAATAAAGTCCTTTATTATGAAGTTGAGTTGGTTGATTTTGTCAAGGAAAAACCATTTTGGAAAATGAACACAGAAGAGAAAATAGAAGCCTGTGAGAGAAAGAAGCACGAAGGAAATCTGCTGTTCAAAGCTGAAAATTTCATGCACGCATCTAAGAAATATGAAAAGGCTGTAAAGTACATTGAGTTTGATCACTCATTCGGTGAAGATGAGAAGCATCGTTCAAATAACTTACGTTTATCCTGCAACTTGAACAATGCTGCCTGCAAACTTAAATTGGGAGAGTATATTGAAGCTTCAAGACTATGCACAAAGGTCCTACAACAAGACCCTTCAAATATCAAGGCTCTTTATAGAAGATGCCAAGCATACATGAAAACATCAGACTTGGAGAAAGCCGAGGCTGACATTAAAAGAGCTTTGACCATTGATCCAAATAACAGAGACATTAAACTTGAGTACAAAGAGCTCAAAGTTAAGAAAAAGGAATACAATGCATATGAAGCTGGCATCTTCAGCACAATGGTTTCAAGAATGAGCTAG 1620 0.4006 MPMAVSHLSHSHQNQLKTEDSQFSFKEIGNEGLTKRILRKGVSWQTPFSGDAVEVHFRGHVENGASLESSYDKGFTFRFKLGQCEVIKGWDEGVATMKKGERAIFKIPPNLAYGEQGSPPLVPPNATLIYEIEMLSWSTIRDLTGDGGIMKKLIREGEGWATPREDDEVLVKYEARLENAMLVSKSEEGVEFNVSDGYLCPAMSIAVKTMRKGEVAELAVRLFYGQSKNSNMTTQLDGVSPPDSNLTSIKLELVSWKVVTDVTGDKKILKKIKKVGEGFDRPNEGSQVKVIYLCKGEDDIIIERKGSEEEPFEFTTQEEQVPEGLERAIMTMKKAEQALVIVHAEYLCGSNNSQGNTANNKVLYYEVELVDFVKEKPFWKMNTEEKIEACERKKHEGNLLFKAENFMHASKKYEKAVKYIEFDHSFGEDEKHRSNNLRLSCNLNNAACKLKLGEYIEASRLCTKVLQQDPSNIKALYRRCQAYMKTSDLEKAEADIKRALTIDPNNRDIKLEYKELKVKKKEYNAYEAGIFSTMVSRMS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3846g00003 539 Gene3D - 140 257 IPR046357 GO:0003755
Vium3846g00003 539 Gene3D - 5 139 IPR046357 GO:0003755
Vium3846g00003 539 Gene3D Tetratricopeptide repeat domain 376 532 IPR011990 GO:0005515
Vium3846g00003 539 SUPERFAMILY TPR-like 379 527 IPR011990 GO:0005515
Vium3846g00003 539 Pfam Tetratricopeptide repeat 474 506 IPR001440 GO:0005515
Vium3846g00003 539 SUPERFAMILY FKBP-like 143 226 - -
Vium3846g00003 539 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 50 138 IPR001179 GO:0003755
Vium3846g00003 539 MobiDBLite consensus disorder prediction 1 21 - -
Vium3846g00003 539 SUPERFAMILY FKBP-like 255 392 - -
Vium3846g00003 539 Gene3D - 258 375 IPR046357 GO:0003755
Vium3846g00003 539 ProSiteProfiles TPR repeat profile. 473 506 IPR019734 GO:0005515
Vium3846g00003 539 PANTHER PEPTIDYLPROLYL ISOMERASE 26 141 - -
Vium3846g00003 539 MobiDBLite consensus disorder prediction 7 21 - -
Vium3846g00003 539 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 285 373 IPR001179 GO:0003755
Vium3846g00003 539 SMART tpr_5 390 423 IPR019734 GO:0005515
Vium3846g00003 539 SMART tpr_5 473 506 IPR019734 GO:0005515
Vium3846g00003 539 SMART tpr_5 439 472 IPR019734 GO:0005515
Vium3846g00003 539 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 166 246 IPR001179 GO:0003755
Vium3846g00003 539 SUPERFAMILY FKBP-like 16 136 - -
Vium3846g00003 539 FunFam Peptidyl-prolyl cis-trans isomerase 26 138 - -
Vium3846g00003 539 FunFam Peptidylprolyl isomerase 378 533 - -
Vium3846g00003 539 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 281 370 IPR001179 GO:0003755
Vium3846g00003 539 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 162 231 IPR001179 GO:0003755
Vium3846g00003 539 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 47 135 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3846g00003 Vium-Chr3846 63486 67312 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3846g00003 27 538 Calmodulin-binding Proteins AT5G48570 53.565 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3846g00003 - - pvu:PHAVU_001G118200g 964.526