Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3846g00002 ATGGAAGGAGAGGGTTATTGTGGGAGTTTCTTTCAGAGGTGCAAGCCTTACATAGCTATGATTTCTCTGCAATTTGGGTTTGCGGGTATGAACATAATCACTAAGGTCTCCCTCAACCGTGGGATGAGCCACTATGTGCTTGTGGTTTATAGACACGCCTTTGCTACTGCGGCTATTGCTCCTTTTGCTCTTGTTCTTGAGAGGAAAGTGAGGCCCAAGATTACATTTCTTATGTTCATGCAAATATTCGTGTTGGGTCTACTTGGGCCTGTGATTGATCAGAACTTATACTATGCGGGGTTGAAATTCACTTCCCCTACCTACTCATGTGCAATAAGCAACATGCTCCCTGCAATGACGTTTGTGATGGCTGCTATTTTCAGAATGGAAAAGTTGGACATGAGAAAACTTAGATGCCAAGCAAAAGTGATAGGAACTATAGTAACGGTTGCTGGGGCCATGTTGATGACACTGTACAAAGGGCAAGTCATCAATTTCTTGGGTTCTCAGTACATGCATCACCCCAGAAATTATGTTCCAGAAAACACCACTGATTCTGGGGAAAAGGATTGGTTTAAGGGCTCTATTCTTCTCATAATTGCCACCCTTGCTTGGGCTTCTTTCTTCATCCTTCAGGCAGTCACACTAAGGAAATACCCTGCTCAGCTCTCTCTCACAGCACTTGTGTGTGCCTTAGGTACACTGCAGTCGATTGCAGTTACCTTTGTCATGGAACACAAGACATCTGTTTGGAGCATTGGCTGGGATATGAACCTTCTTGCAGCAGCCTATGCTGGAATAATATCATCAGGAATCACCTACTATGTTCAAGGGATTGTCATGCAAAAGAAAGGGCCTGTTTTTGTAACTGCCTTCAGCCCTTTGATGATGATTATCGTAGCCATCATGGGTGCATTCATCCTTGCAGAAAAAATATATCTTGGAGGGGTCATGGGAGCTATTCTCATAGTAATGGGACTTTACGCAGTTCTGTGGGGAAAATACAAGGAGAACAAGGAGAAAGAAGCGGAGATAACCAATGAGGAGATGAAGTGTTGTTCAGAAAATGGGAGGTTGGAGACTGTGGTGGAAGAAGCCGAAGCAAACAACGATATCGAGATGCAAAAGGGTGAAGAAACGTCGAGAGATTTAAGGGTAGCCATTGTTGTTCCAAAAGTTTAA 1182 0.4374 MEGEGYCGSFFQRCKPYIAMISLQFGFAGMNIITKVSLNRGMSHYVLVVYRHAFATAAIAPFALVLERKVRPKITFLMFMQIFVLGLLGPVIDQNLYYAGLKFTSPTYSCAISNMLPAMTFVMAAIFRMEKLDMRKLRCQAKVIGTIVTVAGAMLMTLYKGQVINFLGSQYMHHPRNYVPENTTDSGEKDWFKGSILLIIATLAWASFFILQAVTLRKYPAQLSLTALVCALGTLQSIAVTFVMEHKTSVWSIGWDMNLLAAAYAGIISSGITYYVQGIVMQKKGPVFVTAFSPLMMIIVAIMGAFILAEKIYLGGVMGAILIVMGLYAVLWGKYKENKEKEAEITNEEMKCCSENGRLETVVEEAEANNDIEMQKGEETSRDLRVAIVVPKV 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3846g00002 393 PANTHER WAT1-RELATED PROTEIN 15 342 IPR030184 GO:0016020|GO:0022857
Vium3846g00002 393 Coils Coil 336 356 - -
Vium3846g00002 393 Pfam EamA-like transporter family 17 157 IPR000620 GO:0016020
Vium3846g00002 393 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020
Vium3846g00002 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 160 - -
Vium3846g00002 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 237 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3846g00002 Vium-Chr3846 55371 57771 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3846g00002 1 391 Nodulin-like Gene Family AT5G07050 62.374 1.25e-175 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3846g00002 - - pvu:PHAVU_001G118300g 730.709