Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3846g00001 ATGGAGCTCTTTTCCTTCCTTTTCATTGCCCTTCTCTTCACTTTCTATCTCTATTTTGTTACAGGAAAACCCCGCAAAACTAACCACAAAGGCTTCAAACACTACCCTCTTATTGGAACCTTACCGGAATTCCTCAAAAACCGCCATCGCTTCCTCGAATGGAGCACCCAAGTCCTCCGCGACTGCCCCACCAACACCGCCGTCTTCTCCCGCCCCTACAGTTACCACGGCGTCATAACGGCCAACCCCGACAACGTGGAACACATGCTCAAAACCCGATTCCAGAACTACCCGAAGGGCGAACGCTTCATCCACCATCTACAAGACTTCCTCGGCAACGGAATCTTCAACTCCGACAGCGAACTCTGGAAGGTGCAGAGAAAAATCGCCAGCCACGAGTTTAGCACCAAATCACTCCGTAACTTCATTGTCAACTCCGTCACCACCGAACTCCAAACCAGGCTTCTTCCAATTCTCTCCCTAGCCTCCCAGACAAACAGGGTCCTCGATTTGCAGGACCTCTTCGAGCGCTTCGCTTTCGACAACGTCTGCAAGCTAGCTTTCAACGTCGACCCCGCCTGTCTCGGCGGCGACGGTACCGCCGGTGCCGAGTTCATGAGCGCGTTCGAGGCCGCCGCAGGGCTGAGTTCAGGGAGATTCATGAGCGCGTTACCCTTCATGTGGAAAATAAAAAAGCTGTTGAACATCGGAACAGAAAGGAGACTGAGAGAATCAATCACCACCGTCCACGTGTTTGCTGACTCCATCATACGGTCCCGATTGGAGTCCAGGGATCCCGCCGGCGACGACGAAGATTTGCTTTCGCGTTTCATCAGAACAAAGGAGAGCTCGCCAGAGTTTCTACGCGACGTTGTGATAAGTTTCATTCTCGCAGGGCGTGACACGACATCGTCCGCGCTCACCTGGTTCTTCTGGATTCTTTCTTCCAGACCTGACGTGCGGAGAAAAATTCGCGACGAAATCGCAAGGGTTCGGTCCGCCACATGTGGCGTTGGCGCGTTTGGGTACGAGGAGCTGAGAGAGATGCATTACCTGCATGCGGCGCTTACGGAGGCGATGAGGCTGTACCCGCCGGTGCCTGTTGACTCGAAGAAGTGTCTGGACGACGACGTTTTACCGGATGGAACTCGGATAGGGAAGGGTTGGTTCATATCGTATCACACGTACGCCATGGGGAGGATGGAGAGCGTGTGGGGAAAAGACTGTACCCTATACAATCCTGATAGGTGGTTGGAGAATGGCGTGTACCGAACAGAGAGTCCGTTTCGTTTTCCAGTGTTTCACGCAGGTCCACGAATGTGTCTCGGGAAAGAAATGGCTTATATTCAGATGAAGTCCATTGCAGCTTCCCTCATAAAGAACTTTGAGATTGAGGCAGTGGATAAAGACACGTGTCCAGAGCATGTCCTTTCTTTGACGTTGAGGATGAAAGGAGGCTTGACCGTGAGGGTAAGGACAAGGGATACACAAAGCCAGTCTCCACAGTAA 1509 0.5249 MELFSFLFIALLFTFYLYFVTGKPRKTNHKGFKHYPLIGTLPEFLKNRHRFLEWSTQVLRDCPTNTAVFSRPYSYHGVITANPDNVEHMLKTRFQNYPKGERFIHHLQDFLGNGIFNSDSELWKVQRKIASHEFSTKSLRNFIVNSVTTELQTRLLPILSLASQTNRVLDLQDLFERFAFDNVCKLAFNVDPACLGGDGTAGAEFMSAFEAAAGLSSGRFMSALPFMWKIKKLLNIGTERRLRESITTVHVFADSIIRSRLESRDPAGDDEDLLSRFIRTKESSPEFLRDVVISFILAGRDTTSSALTWFFWILSSRPDVRRKIRDEIARVRSATCGVGAFGYEELREMHYLHAALTEAMRLYPPVPVDSKKCLDDDVLPDGTRIGKGWFISYHTYAMGRMESVWGKDCTLYNPDRWLENGVYRTESPFRFPVFHAGPRMCLGKEMAYIQMKSIAASLIKNFEIEAVDKDTCPEHVLSLTLRMKGGLTVRVRTRDTQSQSPQ 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3846g00001 502 Gene3D Cytochrome P450 16 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3846g00001 502 Pfam Cytochrome P450 32 473 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3846g00001 502 SUPERFAMILY Cytochrome P450 27 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3846g00001 502 CDD CYP86A 66 487 - -
Vium3846g00001 502 PRINTS P450 superfamily signature 432 441 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3846g00001 502 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3846g00001 502 PRINTS P450 superfamily signature 441 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3846g00001 502 PRINTS P450 superfamily signature 298 315 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3846g00001 502 FunFam Cytochrome P450 23 497 - -
Vium3846g00001 502 PRINTS E-class P450 group I signature 287 304 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3846g00001 502 PRINTS E-class P450 group I signature 441 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3846g00001 502 PRINTS E-class P450 group I signature 431 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3846g00001 502 PRINTS E-class P450 group I signature 307 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3846g00001 502 PRINTS E-class P450 group I signature 353 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3846g00001 502 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 434 443 IPR017972 GO:0005506|GO:0016705
Vium3846g00001 502 PANTHER CYTOCHROME P450 18 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3846g00001 Vium-Chr3846 11941 13659 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3846g00001 6 494 Cytochrome P450 AT3G56630 58.586 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3846g00001 - - pvu:PHAVU_001G118600g 922.154