Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3844g00005 ATGGCTCTGTTGTATTTTGCTTTGCTCATTCTGCTCTTTCTTTTTTCTCTTAAGCTCTTGTTCCAAACAAGAAGATTTAGAAACCTTCCTCCAGGACCACTTTCTTACCCTATAATCGGAAACCTCCTCCAACTCAAACAGCCTTACCACCGCACATTCTCTCAGATGTCGCAAAAATACGGTCCGGTCTTCTCTCTCTGGTTCGGTTCCCGACTCGTTGTCGTCGTTTGTTCACAACCCGCGGTGCAAGAATGCTTCACCAAAAACGACATCGTGTTGGCGAACCGACCTCACTTTCTGTTCGGCAAATACATCAGCTACAATAACAGCACCATCCTTCACTCCTCCTACGGCGACCACTGGCGCCACCTCCGCCGCATCTTGTCGCTGGAGGTTGTTTCAGCGACCCGTTTAAACTCCTTCTACGAGGTTCGAAGGGACGAAATCATGAGGCTGGTGCAAAAGCTCGCTAAGCTCTCATCACACCAGTTCACGAAAGTGGATCTAAAAGCCATGTTTATGGAAACATCATTTAATACTATGATGAGAATCGTGTCTGGGAAAAGGCTCTTTGGTGATGATTGTGACGTGAACGATGTCGAGAAAGCAAAAGAATTCAAACAAATCATCAAAGAGTTAGTGATATTAGCAGGAGTCAATAATCGTGGAGATTTCTTGCCTTTCGTGAGATGGTTTGATTTTGATAATTTGGAGAAGAAGCTAAAAGGAATTGGTAAGAGAACCGATGCATTCTTACAAGAACTCATCGAAGAGCATCGTAATGGAAAGAACAATGGAAATACTATGATAGATCATCTTCTTGCTCAACAAAAATCACAACCTGAACAATACACCGATCAAATCATCAAAGGACTTTCTTTGAGCTTACTACTTGCTGGAACAGATACATCAGCTTTAACTTTAGAATGGGCAATGGCCAATTTATTGAACCATCCAGAAGTTATAAAGAAGGCAAAAAATGAAATAGACACTTATGTAGGACCTAATCGTCTTATAGAGGAATCCGACATGTCAAAACTTTCTTACATTCAATGTATTGTTTATGAGACACTTCGATTGCATCCTGCTGCTCCAATTTGGTCACCACATTTGTCTTCNTAA 1122 0.418 MALLYFALLILLFLFSLKLLFQTRRFRNLPPGPLSYPIIGNLLQLKQPYHRTFSQMSQKYGPVFSLWFGSRLVVVVCSQPAVQECFTKNDIVLANRPHFLFGKYISYNNSTILHSSYGDHWRHLRRILSLEVVSATRLNSFYEVRRDEIMRLVQKLAKLSSHQFTKVDLKAMFMETSFNTMMRIVSGKRLFGDDCDVNDVEKAKEFKQIIKELVILAGVNNRGDFLPFVRWFDFDNLEKKLKGIGKRTDAFLQELIEEHRNGKNNGNTMIDHLLAQQKSQPEQYTDQIIKGLSLSLLLAGTDTSALTLEWAMANLLNHPEVIKKAKNEIDTYVGPNRLIEESDMSKLSYIQCIVYETLRLHPAAPIWSPHLSS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3844g00005 373 Gene3D Cytochrome P450 22 373 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00005 373 PRINTS P450 superfamily signature 352 363 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00005 373 PRINTS P450 superfamily signature 299 316 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00005 373 PRINTS E-class P450 group I signature 81 102 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00005 373 PRINTS E-class P450 group I signature 308 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00005 373 PRINTS E-class P450 group I signature 176 194 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00005 373 PRINTS E-class P450 group I signature 288 305 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00005 373 PRINTS E-class P450 group I signature 351 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00005 373 PRINTS E-class P450 group I signature 57 76 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00005 373 SUPERFAMILY Cytochrome P450 30 371 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00005 373 Pfam Cytochrome P450 30 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00005 373 PANTHER CYTOCHROME P450 82C3-RELATED 8 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3844g00005 Vium-Chr3844 40338 42517 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3844g00005 12 373 Cytochrome P450 AT4G37330 51.507 1.57e-128 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3844g00005 K13260 - gmx:100811727 541.962