Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3844g00004 ATGGCTCTGTTGTATTTTGCTTTGCTCATTCTGCTCTTTCTTTTTTCTCTTAAGCTCTTGTTCCAAACAAGAAGATTTAGAAACCTTCCTCCAGGACCACTTTCTTACCCTATAATCGGAAACCTCCTCCAACTCAAACAGCCTTACCACCGCACATTCTCTCAGATGTCGCAAAAATACGGTCCGGTCTTCTCTCTCTGGTTCGGTTCCCGACTCGTTGTCGTCGTTTGTTCACAACCCGCGGTGCAAGAATGCTTCACCAAAAACGACATCGTGTTGGCGAACCGACCTCACTTTCTGTTCGGCAAATACATCAGCTACAATAACAGCACCATCCTTCACTCCTCCTACGGCGACCACTGGCGCCACCTCCGCCGCATCTTGTCGCTGGAGGTTGTTTCAGCGACCCGTTTAAACTCCTTCTACGAGGTTCGAAGGGACGAAATCATGAGGCTGGTGCAAAAGCTCGCTAAGCTCTCATCACACCAGTTCACGAAAGTGGATCTAAAAGCCATGTTTATGGAAACATCATTTAATACTATGATGAGAATCGTGTCTGGGAAAAGGCTCTTTGGTGATGATTGTGACGTGAACGATGTCGAGAAAGCAAAAGAATTCAAACAAATCATCAAAGAGTTAGTGATATTAGCAGGAGTCAATAATCGTGGAGATTTCTTGCCTTTCGTGAGATGGTTTGATTTTGATAATTTGGAGAAGAAGCTAAAAGGAATTGGTAAGAGAACCGATGCATTCTTACAAGAACTCATCGAAGAGCATCGTAATGGAAAGAACAATGGAAATACTATGATAGATCATCTTCTTGCTCAACAAAAATCACAACCTGAACAATACACCGATCAAATCATCAAAGGACTTTCTTTGAGCTTACTACTTGCTGGAACAGATACATCAGCTTTAACTTTAGAATGGGCAATGGCCAATTTATTGAACCATCCAGAAGTTATAAAGAAGGCAAAAAATGAAATAGACACTTATGTAGGACCTAATCGTCTTATAGAGGAATCCGACATGTCAAAACTTTCTTACATTCAATGTATTGTTTATGAGACACTTCGATTGCATCCTGCTGCTCCAATTTGGTCACCACATTTGTCTTCAGAAGATTGCGTCGTAGGAAAATATAATCTCCCAAAAGACACAATTGTGTTGGTGAATGCTTGGGCTGCTCATATGGATCCAGAAATGTGGAGTGACCCAACACACTTTAAGCCTGAAAGGTTTGAAAATGAAAATGAAGTAAACAGGTTACTTTCATTTGGGTTAGGACGGAGAGCTTGCCCTGGATCAAACTTGGCTCAACGCACAGTTGGTTTATCCATAGCCTTATTACTTCAATGTTTTGAGTGGAAACGAATTGGTAAGGAAGAAATTGATATGTCTGAAGCAAATGGAATTACTATTTCAAGAAAAAATTCATTGGAAGCTATGTGCCAACTTCATCAATCACCCGCAGTTAAGGATATGTACTGA 1491 0.4118 MALLYFALLILLFLFSLKLLFQTRRFRNLPPGPLSYPIIGNLLQLKQPYHRTFSQMSQKYGPVFSLWFGSRLVVVVCSQPAVQECFTKNDIVLANRPHFLFGKYISYNNSTILHSSYGDHWRHLRRILSLEVVSATRLNSFYEVRRDEIMRLVQKLAKLSSHQFTKVDLKAMFMETSFNTMMRIVSGKRLFGDDCDVNDVEKAKEFKQIIKELVILAGVNNRGDFLPFVRWFDFDNLEKKLKGIGKRTDAFLQELIEEHRNGKNNGNTMIDHLLAQQKSQPEQYTDQIIKGLSLSLLLAGTDTSALTLEWAMANLLNHPEVIKKAKNEIDTYVGPNRLIEESDMSKLSYIQCIVYETLRLHPAAPIWSPHLSSEDCVVGKYNLPKDTIVLVNAWAAHMDPEMWSDPTHFKPERFENENEVNRLLSFGLGRRACPGSNLAQRTVGLSIALLLQCFEWKRIGKEEIDMSEANGITISRKNSLEAMCQLHQSPAVKDMY 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3844g00004 496 PRINTS P450 superfamily signature 299 316 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00004 496 PRINTS P450 superfamily signature 433 444 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00004 496 PRINTS P450 superfamily signature 352 363 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00004 496 PRINTS P450 superfamily signature 424 433 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00004 496 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 426 435 IPR017972 GO:0005506|GO:0016705
Vium3844g00004 496 PRINTS E-class P450 group I signature 176 194 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00004 496 PRINTS E-class P450 group I signature 308 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00004 496 PRINTS E-class P450 group I signature 81 102 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00004 496 PRINTS E-class P450 group I signature 57 76 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00004 496 PRINTS E-class P450 group I signature 351 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00004 496 PRINTS E-class P450 group I signature 423 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00004 496 PRINTS E-class P450 group I signature 433 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00004 496 PRINTS E-class P450 group I signature 392 416 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00004 496 PRINTS E-class P450 group I signature 288 305 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00004 496 PANTHER CYTOCHROME P450 82C3-RELATED 8 485 - -
Vium3844g00004 496 Pfam Cytochrome P450 30 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00004 496 Gene3D Cytochrome P450 19 490 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00004 496 SUPERFAMILY Cytochrome P450 30 481 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3844g00004 496 FunFam Cytochrome P450 family protein 21 489 - -
Vium3844g00004 496 CDD CYP81 61 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3844g00004 Vium-Chr3844 36869 39547 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3844g00004 2 489 Cytochrome P450 AT4G37370 52.033 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3844g00004 K13260 - gmx:100811727 734.176