Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3839g00002 ATGATATCGACATATCGTACCATGGGTTTCAGAAAGGTTGATCCAGATCGTTGGGAATTTGCAAATGAGGGTTTTTTGAGGGGTCAAAAGCACTTGCTTAGGAATATAACACGAAGAAAACCTGCCCATGGTCAAAATCATCAACAGGCTCAGCAACCCCATGGACAGAGTTCATCAGTAGGGGCATGTGTTGAAGTCGGAAAGTTTGGGCTTGAGGAAGAGGTTGAGAGGCTTAAAAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGATTGAGGCAGCAGCAACAGACCACTGATAACCAGTTGCAAACAATGGTTCAGCGCCTTCAGGGAATGGAGCAACGACAGCAGCAAATGATGTCATTCCTTGCGAAAGCTGTTCAGAGCCCTGGATTCTTTGCTCAGTTTGTACAACAACAAAATGAGAGCAATAGGCGCATAAGTGAAGTCAACAAAAAGCGTAGGCTCAAGCAGGAAGGTATTGCAGAAACAGTGAGTGCTGCTACTCCAGATGGACAAATCGTTAAATATCAACCTCTGGCGAATGAAGCTGCAAAAGCCATGCTTAAGCAGATCATGAAATGGGATACTTCTCGTGTAGAATCTTTTAATAAAAACCCCGAGGAGTACATCATTGGTGATGCTTCATCATCTTCCAGTGGAATGGACAGTAGTGGCTCTTCAGGCTGGACTTCCGGAGTCACTCTTAAGGAGGTATCTCCAGCTTCGGTGCAGTCTTCACACGTTCCAGCTGCTACTGGCACCCAAGGGCATGTCCGCCCGACTGTTAAACCCGAAATTCCGTCTGTACCACAAGCAGTAGCTTCTGAAAATGTTACAAAGGATGGAGGACATGGTGTGCCTTCTATCCCCGTTTCTCAAGCAGATATGGTGATCCCTGATCTTCCTCCAATAACAGAGATGGTGACAGGAAATATGCTTGATATTCCCGAAGAAAATTATATGGCAACTGAATCGGATGAGGGATATATGGATCCTTCACTGGGCGATGCCGGGTCATTTCCCATTGATTTTGAGGTCATTTCACCTGATAACATTGATGATTTCTTAGGAAATCCTTCTATTTGGGATGAAATTTTGCAAACTCCAGTTCCAGAGGATATCGACACCAATATTGCCGATGTATCCAACGGGAATGAGGTCCAGTCAACGGAAAATGGATGGAGCAAAACTCAACGTATGGATCACCTTACAGAGCAGATGGGTCTTCTTTCTTCTGATACAAAACGAGTTTGA 1260 0.4476 MISTYRTMGFRKVDPDRWEFANEGFLRGQKHLLRNITRRKPAHGQNHQQAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNESNRRISEVNKKRRLKQEGIAETVSAATPDGQIVKYQPLANEAAKAMLKQIMKWDTSRVESFNKNPEEYIIGDASSSSSGMDSSGSSGWTSGVTLKEVSPASVQSSHVPAATGTQGHVRPTVKPEIPSVPQAVASENVTKDGGHGVPSIPVSQADMVIPDLPPITEMVTGNMLDIPEENYMATESDEGYMDPSLGDAGSFPIDFEVISPDNIDDFLGNPSIWDEILQTPVPEDIDTNIADVSNGNEVQSTENGWSKTQRMDHLTEQMGLLSSDTKRV 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3839g00002 419 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 225 IPR027725 -
Vium3839g00002 419 Coils Coil 68 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3839g00002 Vium-Chr3839 45652 49369 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3839g00002 1 416 HSF AT1G32330 49.773 3.81e-124 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3839g00002 K09419 - gmx:100815121 664.07