Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3836g00002 ATGCGCCTTCTTGATCATCCCAATGTTGTATCACTAAAACATTGCTTCTTTTCTACCACAGATAAAGATGAACTCTATCTCAATTTGGTACTTGAATATGTACCTGAGACTGTATATCGTGTGGTGAAGCACTATAGCAAGGCAAATCAGCGGATGCCCCTAATATATGTTAAACTTTACACATATCAGATTTGTAGAGCCTTGGCTTATATTCATGGATGTGTTGGAGTGTGCCACAGGGACATTAAGCCACAGAATCTGCTGGTAAATCCTCATACACATCAGGTCAAACTTTGTGATTTTGGGAGTGCAAAAGTTCTGGTCAAGGGTGAACCTAACATATCGTATATCTGCTCTCGATACTATCGAGCTCCTGAACTCATATTTGGAGCCACTGAGTATACTACTGCAATTGATATGTGGTCTGTTGGTTGTGTGCTGGCTGAGCTGCTCCTGGGGCAGCCTCTGTTTCCAGGAGATAGTGGAGTTGATCAACTTGTTGAAATTATCAAGGTACTCGGGACTCCCACTCGTGAGGAAATAAAATGCATGAATCCAAATTACACAGAGTTCAAGTTCCCTCAAATCAAGGCTCACCCCTGGCATAAGATATTCCACAAGCGTATGCCCCCAGAAGCAGTAGATCTTGTTTCAAGGCTTCTCCAGTATTCTCCAAATTTACGAAGTACTGCTTTGGATGCATGTGTTCACCCATTTTTTGATGAACTCCGCGACCATAATACCCGTCTCCCTAATGGGCGCCCTATGCCACCCCTCTTTAATTTCAAACCTCAAGAGCTGAAGGGAGTGACTTTGGAGCTGCTATGCAAACTTGTTCCAGAACATGCTCGGAAACAGTGTCCATCCCTTAATTTCTAG 879 0.4334 MRLLDHPNVVSLKHCFFSTTDKDELYLNLVLEYVPETVYRVVKHYSKANQRMPLIYVKLYTYQICRALAYIHGCVGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAELLLGQPLFPGDSGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRSTALDACVHPFFDELRDHNTRLPNGRPMPPLFNFKPQELKGVTLELLCKLVPEHARKQCPSLNF 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3836g00002 292 SMART serkin_6 1 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3836g00002 292 CDD STKc_GSK3 1 243 IPR039192 -
Vium3836g00002 292 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 286 - -
Vium3836g00002 292 SUPERFAMILY Protein kinase-like (PK-like) 1 265 IPR011009 -
Vium3836g00002 292 Pfam Protein kinase domain 1 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3836g00002 292 Gene3D Transferase(Phosphotransferase) domain 1 36 284 - -
Vium3836g00002 292 ProSiteProfiles Protein kinase domain profile. 1 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3836g00002 292 FunFam Shaggy-related protein kinase kappa 36 284 - -
Vium3836g00002 292 Gene3D Phosphorylase Kinase; domain 1 1 35 - -
Vium3836g00002 292 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3836g00002 Vium-Chr3836 34191 38072 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3836g00002 7 248 Core Cell Cycle Gene Families AT1G76540 35.802 1.94e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vium3836g00002 Pkinase 4.9e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3836g00002 K27413 - qsa:O6P43_004640 594.734