Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3835g00028 ATGCTCATGGCTTGTGCAGGAAGAGGGAGTTTAGTTATGGCAGAAAACAAAGACGAAGCCTATTCTGAAACTTCTGAATGTTCATCAGCTTTAACCATGCCAATGGCTAGCAGGTGCAGATGCTTGTTTAATAGATTATGCGGTTCTACCGATTCATGGAACAAAAGCACCACCCCAAAAGGTCGAAGACTTTTCCACAGAGATGTGGAAAAAGAAGAATTCCAGTATGCTAGCAGTCACTGTCTCTCATCGTACTATAGTGTCTTTGTGGTTCGACTAGCAATCATGGTCATGCTAGCCATCTTGATAGGCCTTCTCACTATACTGACATGGCATTTCACGAAGATTTACACAGCAAAATCACTTAACAGTTTGGCATATGGTTTGCGTTATGAACTTCTGCAACGCCCGGTTTTGAGGATGTGGAATATTTTGAACTCTACTTCTGAAATTACTACTGCTCAGGTCAAACTGTCTCAGTATGTGATCAGACGTCACAGCAACCCTGCAACTCAAGCAGAACAAGTTGAGCTGTATGAAGCGATGAGGGCTGTAACATGGGCTTTATTTGCAAGTCGGAAAGCTCTAAACTCTATAACTATCAACTATAAGAATGGATTTGTGCAAGCATTCCACAGAGATCTGAAGGACAACAACACATTTTACATCTATTCTGATCTTTCAAATTATTCTATGGGAGTCAGCAACTCCAATGAGGCCAATTCCGTTTCAACACATCAAGCATGGGATGATAAAACCCCTCGTGGAAACTATTCTGCAATATGGTACCGTGAGCCACTTGACCCTGTGAGTGGTGAAAAGATTGGAAAAGCTATGAAAATTGCTCCCGAAGACTTGATCAACATAGCTGGCCTTTCCCAAGTACCTGATGGTGTAGCTTCATGGCATGTTGCCGTGAGCAAGTTCACAGATTCACCACTGCTTTCAGCAGCATTGCCAGTTTGGGACTCTTCTAATGAGACCATTATGGCAGTTGTGGGGGTCACAACTGCATTTTACAGTGTAGGACAGTTAATGAGAGAGCTTGTTGAGTTGCACAGTGGCCATATGTACTTGACTTCCCAAGAGGGTTATTTGCTTGCAACTTCCACAAGTGCACCTCTTCTGGCAAATTCAACAAAGCCTCCTAAGCTTAAGATGGCCGTTGACTGTGAAGACTACGTAATTCGACAGGGAGCTGAGTGGTTACAGAGAACTTATGGGAACAATTTTCCTCCAAGTCACGAGATTCATGTTGAAAATGTCAAGCTTGGCCACCAAAGATATTACATTGACTCGTTCTTCCTAAATTTGAAGAGACTTCCTTTGGTTGGTGTGATTATCATACCAAGAAAGTATATCATGGGACAGGTTGATGAAAGAGCCTTCAAAACGCTGGTTATTCTGATATCTGCATCATTATGTATTTTAGTCATTGGGTGTGTTTGCATTCTGATATTGACAAACGGAGTATCCAAGGAAATGAATCTAAGAGCAGAACTGATAAGTCAACTGGAAGCAAGAAGAAAAGCAGAGGCATCAAGTAATTACAAAAGTCAATTCCTTGCAAACATGAGTCACGAACTGAGGACACCTATGGCAGCAGTAATCGGGTTGCTTGACATTCTCATATCTGATGACTGTCTCACAAATGAACAATATTCAACCGTGACTCAAATAAGAAAATGCTCAACTGCTCTGCTCCGTCTTCTTAACAACATCTTGGATCTGAGTAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGATTTAGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTCCAGTGCATTAACCACAATGTGGAGACTGTTTTAGACTTGTCTGATGATATGCCAAAGATCGTTCGGGGTGATTCTGCAAGGGTGGTTCAAATATTTGCAAATCTGATCAACAATTCAATCAAGTTCACTCCATCGGGTCATATTGTTCTGCGGGGATGGAGTGAAAGCCCAAATTCTTCCGTTGGAAGTCCAAATGTTCCTCTTGACCAGAAGAAATTATGGAGTTTACAGAAGTGCAGAGAGAAACCAAACGCAAATCATTCAAAAAAAGCATCTATGAAAGACAACAAAGTGATACTTTGGTTTGAAGTTGAGGACACAGGCTGTGGTATTGACCCAAGCAAGTGGGATTCCGTGTTTGAAAGCTTTGAGCAAGCTGATCCGTCAACTACTCGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATCGTCAGAAACTTGGTTAACAAGATGGGTGGGGACATAAAAGTAGTAAAAAAGGAGGGCGCAGGAACACTGATGCGATTATGCTTGCTTCTCAGCGCGCCCATGGATGTCACAGAACAACAGTGTGCAGTAGATTTGACAGACAATGGCTTAGTGGTACTGATTGGCTTACATGGCAACATGGGTAGATTAATTACATCCAAGTGGCTTCAGAAAAACGGGGTGTGCACAATGGAAGCATCTGACTGGAATGGACTAACTCAAATTTTGAGGGAACTATTTCATGTACGAAGTTCAGTCCATAATACTGACTTTGATGCACACTATCCAGCAAAAGAGGAATTGAAGTCTAAACTACTCAGCATACGAGATATGAGGAACCCAGTTTTTGTCATTGTTGTTGACATTGGATTACTTGACTTGAGCACAGATATATGGAAGGATCAACTTAACTTCCTTCACAGGTACTTTGGTAGAGCAAAGTTCCTATGGATGCTGAATCATGACACTTCCAATAACATAAAGATGGAGCTCCGTAGGAAAGGGCATTTACTGATGGTCAACAAACCCCTTTACAAGGGAAAAATGATCCATATTTTGGAATCTGTTATAAAGGAGAGAAATTTTGAGCTACAAAAGAAAAGCATGATTGTTCCAAGGACCACAATGAAAGAGGGAGATTTACACGAATTTCTTGAGATTGATTCCACTCATTTTGATGCTGCTAGTTCTGATGATTCTGACATATCTGATATAGCTGGTTCAAATCCTGCTAGTGCTGATGGAGATAAACCAGTTGAGAAGCTAGACAGATCTCATCCATCATCACCATATCATATGAATAATTGCCTAGTTAGATTAACCAATGAAAATGAATATTTGGAGGAAAATGATTTGAGGAAAGAAGAATCTTCTAGTCCCGGCCCAGATTATGCCACTGAAGAAAACCAACCTAAATCACTGTCCACCAAAGAATCACCATCCATTTCAACAGGAGATCAGGATGGAGATTCTGAATGTGGTGAAACACACAGGGTGACCAGCACAAGTAAATCAGTAGATGGAAAGAAATCTCTTGAGGGCCTAAAGATTTTGCTTGCAGAAGATACACCAGTGCTTCAAAGGGTTGCAACTATAATGCTTGAGAAAATGGGAGCTGCTGTAGTTGCTGTAGGTGATGGACAACAGGCAGTAGAAGCTCTCAATTGCATGTTCACTGCTGAAGATTGCAGAAGGGAATCACTCCAGAAGGATAGAAACAAAAGATCTCAAACAGAGATTTTGTCTAGCCGTCCCTATGACTTGATCCTGATGGATTGTCAGATGCCAAAGATGGATGGCTATGAGGCAACAAAAGAAATCAGGAAATCAGAAGTGGGAACAAGCTTTCACATTCCGATTGTTGCTCTTACAGCACATGCAATGTCCTGTGATGAAGCCAAATGCCTGGAGGTGGGCATGGATGCTTACTTAACAAAGCCAATTGATTTCAAAATGATGGTGTCCACCATTCTTTCACTCACTAAAACAACATCTTGA 3786 0.4155 MLMACAGRGSLVMAENKDEAYSETSECSSALTMPMASRCRCLFNRLCGSTDSWNKSTTPKGRRLFHRDVEKEEFQYASSHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTAKSLNSLAYGLRYELLQRPVLRMWNILNSTSEITTAQVKLSQYVIRRHSNPATQAEQVELYEAMRAVTWALFASRKALNSITINYKNGFVQAFHRDLKDNNTFYIYSDLSNYSMGVSNSNEANSVSTHQAWDDKTPRGNYSAIWYREPLDPVSGEKIGKAMKIAPEDLINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNETIMAVVGVTTAFYSVGQLMRELVELHSGHMYLTSQEGYLLATSTSAPLLANSTKPPKLKMAVDCEDYVIRQGAEWLQRTYGNNFPPSHEIHVENVKLGHQRYYIDSFFLNLKRLPLVGVIIIPRKYIMGQVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMNLRAELISQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKIVRGDSARVVQIFANLINNSIKFTPSGHIVLRGWSESPNSSVGSPNVPLDQKKLWSLQKCREKPNANHSKKASMKDNKVILWFEVEDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGDIKVVKKEGAGTLMRLCLLLSAPMDVTEQQCAVDLTDNGLVVLIGLHGNMGRLITSKWLQKNGVCTMEASDWNGLTQILRELFHVRSSVHNTDFDAHYPAKEELKSKLLSIRDMRNPVFVIVVDIGLLDLSTDIWKDQLNFLHRYFGRAKFLWMLNHDTSNNIKMELRRKGHLLMVNKPLYKGKMIHILESVIKERNFELQKKSMIVPRTTMKEGDLHEFLEIDSTHFDAASSDDSDISDIAGSNPASADGDKPVEKLDRSHPSSPYHMNNCLVRLTNENEYLEENDLRKEESSSPGPDYATEENQPKSLSTKESPSISTGDQDGDSECGETHRVTSTSKSVDGKKSLEGLKILLAEDTPVLQRVATIMLEKMGAAVVAVGDGQQAVEALNCMFTAEDCRRESLQKDRNKRSQTEILSSRPYDLILMDCQMPKMDGYEATKEIRKSEVGTSFHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKMMVSTILSLTKTTS 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3835g00028 1261 FunFam Histidine kinase 1-like protein 505 584 - -
Vium3835g00028 1261 SMART HisKA_10 517 583 IPR003661 GO:0000155|GO:0007165
Vium3835g00028 1261 CDD HisKA 518 579 IPR003661 GO:0000155|GO:0007165
Vium3835g00028 1261 PRINTS Bacterial sensor protein C-terminal signature 707 721 IPR004358 GO:0016310|GO:0016772
Vium3835g00028 1261 PRINTS Bacterial sensor protein C-terminal signature 742 760 IPR004358 GO:0016310|GO:0016772
Vium3835g00028 1261 PRINTS Bacterial sensor protein C-terminal signature 725 735 IPR004358 GO:0016310|GO:0016772
Vium3835g00028 1261 SMART REC_2 1111 1253 IPR001789 GO:0000160
Vium3835g00028 1261 SUPERFAMILY CheY-like 1109 1257 IPR011006 -
Vium3835g00028 1261 MobiDBLite consensus disorder prediction 1046 1103 - -
Vium3835g00028 1261 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 505 584 IPR036097 GO:0000155|GO:0007165
Vium3835g00028 1261 MobiDBLite consensus disorder prediction 1058 1085 - -
Vium3835g00028 1261 MobiDBLite consensus disorder prediction 991 1031 - -
Vium3835g00028 1261 SMART HKATPase_4 630 782 IPR003594 -
Vium3835g00028 1261 Gene3D - 505 584 - -
Vium3835g00028 1261 Gene3D - 1090 1259 - -
Vium3835g00028 1261 Gene3D - 585 783 IPR036890 -
Vium3835g00028 1261 Pfam Response regulator receiver domain 1113 1252 IPR001789 GO:0000160
Vium3835g00028 1261 Pfam His Kinase A (phospho-acceptor) domain 518 583 IPR003661 GO:0000155|GO:0007165
Vium3835g00028 1261 ProSiteProfiles Histidine kinase domain profile. 524 782 IPR005467 -
Vium3835g00028 1261 PANTHER TWO-COMPONENT HISTIDINE KINASE 74 787 - -
Vium3835g00028 1261 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 572 778 IPR036890 -
Vium3835g00028 1261 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 630 780 IPR003594 -
Vium3835g00028 1261 CDD REC_hyHK_CKI1_RcsC-like 1113 1253 - -
Vium3835g00028 1261 ProSiteProfiles Response regulatory domain profile. 1112 1257 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3835g00028 Vium-Chr3835 175296 182246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3835g00028 34 1261 Histidine Kinase Gene Family AT2G17820 63.133 0.0 1568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium3835g00028 HATPase_c 2.4e-23 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3835g00028 - - vra:106777758 2409.79