Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3835g00027 ATGGGAAAGGCTATAGCTAATGCTGAGTATGTGAAGGAAATTGAGAAGGCTCGTCGTGACCTTCGTACTCTTATCTCCAGCAGAAACTGTGCCCCTCTCATGCTTCGATTAGCGTGGCATGATGCTGGTACCTATGATGTTAAGACAAGAACAGGAGGCCCCAATGGTTCTATCAGGAATGCACGAGAGTTGAATCACGCAGCAAACAAAGGGCTGGAAACAGCAGTTCTGTTCTGTGAGGATGTGAAGGCCAAACATCCAAAAGTTTCATATGCTGACCTTTACCAGCTAGCTGGTGTTGTTGCAGTAGAGATCACCGGGGGACCAACTATTGACTTTGTTCCAGGAAGAAAAGATTCATTGGAATCGCCAGCAGAAGGTCGTCTTCCAGATGCCAAACAAGGTGCATCGCATATAAGGGAAATCTTCTATCGCATGGGGCTAAGTGACAAAGACATAGTGGCTCTATCTGGAGGTCACACTTTGGGAAAGGCACATAGAGATCGTTCTGACTTTGAAGGGCAGTGGACAAAGGACCCTTTCAAATTTGATAACTCATATTTTGTAGAATTACTGAAAGGGGAATCAAAAGATTTATTGAAACTTCCCACAGACAAGGCTCTAGTTGAGGATCCTATGTTTCGGAAGTATGTTGAACTGTATGCAAAGGATGAGGATGCCTTTTTCAAAGATTATGCTACCTCACACAAAAAACTCTCAGAGCTTGGTTTCAGTTTGAAGAATCATCGTTCCATATTGGCGAAGGGAGTTATAGGATTCGGTATTGCCTTAACTGCAGTGATCTTGGGTTACTTACATGAACTGAACAAAAGAACCAATTGA 843 0.4342 MGKAIANAEYVKEIEKARRDLRTLISSRNCAPLMLRLAWHDAGTYDVKTRTGGPNGSIRNARELNHAANKGLETAVLFCEDVKAKHPKVSYADLYQLAGVVAVEITGGPTIDFVPGRKDSLESPAEGRLPDAKQGASHIREIFYRMGLSDKDIVALSGGHTLGKAHRDRSDFEGQWTKDPFKFDNSYFVELLKGESKDLLKLPTDKALVEDPMFRKYVELYAKDEDAFFKDYATSHKKLSELGFSLKNHRSILAKGVIGFGIALTAVILGYLHELNKRTN 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3835g00027 280 ProSiteProfiles Plant heme peroxidase family profile. 20 280 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3835g00027 280 Gene3D Peroxidase, domain 2 130 236 - -
Vium3835g00027 280 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 6 245 IPR044831 GO:0004601|GO:0034599
Vium3835g00027 280 PRINTS Haem peroxidase superfamily signature 31 45 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3835g00027 280 PRINTS Haem peroxidase superfamily signature 152 167 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3835g00027 280 PRINTS Haem peroxidase superfamily signature 176 191 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3835g00027 280 PRINTS Haem peroxidase superfamily signature 107 119 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3835g00027 280 PRINTS Haem peroxidase superfamily signature 89 106 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3835g00027 280 FunFam L-ascorbate peroxidase, cytosolic 130 236 - -
Vium3835g00027 280 FunFam Cytosolic ascorbate peroxidase 17 134 - -
Vium3835g00027 280 SUPERFAMILY Heme-dependent peroxidases 10 248 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium3835g00027 280 Gene3D - 17 243 - -
Vium3835g00027 280 ProSitePatterns Peroxidases proximal heme-ligand signature. 152 162 IPR019793 -
Vium3835g00027 280 Pfam Peroxidase 18 224 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium3835g00027 280 Coils Coil 7 27 - -
Vium3835g00027 280 CDD ascorbate_peroxidase 5 244 - -
Vium3835g00027 280 PRINTS Plant ascorbate peroxidase signature 49 59 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium3835g00027 280 PRINTS Plant ascorbate peroxidase signature 128 145 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium3835g00027 280 PRINTS Plant ascorbate peroxidase signature 31 46 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium3835g00027 280 PRINTS Plant ascorbate peroxidase signature 107 119 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium3835g00027 280 PRINTS Plant ascorbate peroxidase signature 168 192 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium3835g00027 280 PRINTS Plant ascorbate peroxidase signature 146 167 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium3835g00027 280 PRINTS Plant ascorbate peroxidase signature 220 244 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium3835g00027 280 PRINTS Plant ascorbate peroxidase signature 63 87 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium3835g00027 280 PRINTS Plant ascorbate peroxidase signature 10 30 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium3835g00027 280 PRINTS Plant ascorbate peroxidase signature 88 106 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vium3835g00027 280 ProSitePatterns Peroxidases active site signature. 31 42 IPR019794 GO:0004601
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3835g00027 Vium-Chr3835 169129 171292 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3835g00027 70 239 Peroxidase AT4G16270 33.175 6.54e-23 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3835g00027 K00434 - gmx:100806101 505.753