Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3835g00017 ATGAAAAACAAGGCACTTGCCAATCATAGAAACATGAAGTTTCTCTTCCAAAACCTTCTTTCGCATCTTCCTTTAATCATTCTTTGGTCTTTTGCCATTGTTACTCAGCATACCAGTGTTGTGTTGAGTCTTCCAAACGATGAAACTGTGCCAGCAATTATTGTGTTTGGAGACTCTATAGTAGACACAGGTAACAACAACTTCATCAACACCATTTTCAGATGCAATTTCCAACCATATGGTAAAGATTTTGGTGGAGGGAATCAACCAAGTGGGAGGTTCAGCAATGGTATAATCCCATCAGACATCATTGCTGCAAAATTTGGAGTGAAAAAGATTTTGCCACCTTATCTTGATCCAAAACTGCAACCTCAAGATCTCCTCACAGGTGTAAGCTTTGCATCTGGTGGTTCTGGATATGATCCTCTAACTTCTAAATCAGCATCTGTGCTATCACTGACAGATCAATTGAACAAGTTTAGGGAATACAAGAGCAAGATAGAGGAAATTGTTGGAGAAAATAGAACATCAACAATAGTATCAAAAGGCATATACATATTGTGCACAGGAAGTAATGACATTGCCAATACTTACTCTTTCTCTCCAATTAGGCGAGCACGTTATGACATTCCTGCATACACAGACTTAATGACTTCACAAGCCACAAACTTCTTGCAGGAACTTTATGGACTTGGAGCAAGAAGGATTGGAGTGATTGGTTTACCAGCTCTAGGGTGCGTGCCCTCGCAGAGAACAATTAAAGGAGGCTTACTGAGAAATTGTTCAGATTCTGAGAACCAAGCAACAATGCTCTTCAACACAAAACTCTCATCACAAATAGATGCACTGAGTAAAAAATTTTCAGAAGCTAGACTTGTCTACCTTGATATTTACAACCCTTTACTCAAAATGATTCAAAATCCTGCTAAATATGGTTTTGAAGTAGCAAACAAAGGATGCTGTGGCACGGGAAATTTTGAAGCAGGCATACTTTGCAACCGTTTGACGCCACACATATGTTCAAATACCGAAAACTACATTTTTTGGGATAGTTTCCATCCTACCCAAGAGGCATATAATGTGCTCTGCTCTCTGGTGTTGGATAACAAAATCAAGGACTTCTTCTAA 1128 0.391 MKNKALANHRNMKFLFQNLLSHLPLIILWSFAIVTQHTSVVLSLPNDETVPAIIVFGDSIVDTGNNNFINTIFRCNFQPYGKDFGGGNQPSGRFSNGIIPSDIIAAKFGVKKILPPYLDPKLQPQDLLTGVSFASGGSGYDPLTSKSASVLSLTDQLNKFREYKSKIEEIVGENRTSTIVSKGIYILCTGSNDIANTYSFSPIRRARYDIPAYTDLMTSQATNFLQELYGLGARRIGVIGLPALGCVPSQRTIKGGLLRNCSDSENQATMLFNTKLSSQIDALSKKFSEARLVYLDIYNPLLKMIQNPAKYGFEVANKGCCGTGNFEAGILCNRLTPHICSNTENYIFWDSFHPTQEAYNVLCSLVLDNKIKDFF 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3835g00017 375 Pfam GDSL-like Lipase/Acylhydrolase 53 362 IPR001087 GO:0016788
Vium3835g00017 375 Gene3D SGNH hydrolase 41 370 IPR036514 -
Vium3835g00017 375 PANTHER GDSL ESTERASE/LIPASE EXL3 34 363 - -
Vium3835g00017 375 CDD SGNH_plant_lipase_like 51 369 IPR035669 -
Vium3835g00017 375 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 53 64 IPR008265 GO:0006629|GO:0016298
Vium3835g00017 375 FunFam GDSL esterase/lipase APG 42 371 - -
Vium3835g00017 375 SUPERFAMILY SGNH hydrolase 184 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3835g00017 Vium-Chr3835 119493 121548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3835g00017 49 370 Pollen Coat Proteome AT1G75910 39.571 4.46e-74 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3835g00017 - - gmx:100810354 607.06