Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3835g00010 ATGGAAGAGGTGTGGAAAGACATAAATCTTGCTACCTTAAATGACCAAGTCACACGCTCCGCAACAACGCACTCCAACTTGGGAGGAGTAATCCTCCAAGACTTTCTCGCTCGACCCTTCACCATGGATCCACCAAACACCATTCTTTCCTCTCAAACTCCCTCCCTCTACGGCGCCCCCTCCTCACCGGCACCACCACTCCTCACGGCTCTCAGCCTGAGCTCACACCCCCACCTCCATTTCGACCCTCACACTCAAAAACCCTCACATCCCCACCACCCTCCTCCACCTTCCAACCACTCTTGCTTCACCACCCCAACCACCGCCTCCTTAGGCGCCAAAAGATTCGCAGAACCCGATTGCAACCTCGGAGACAGAAGAAACAAGCGCATGATCAAGAACCGCGAGTCCGCTGCACGATCGCGAGCCAGGAAACAGGCTTACACGAATGAATTGGAGGTAGAAGTTGAGCAATTGAAGGAAGAGAATGCAAGGCTGAAAAGACAGCAAAAACAGCTGAGTGAAGTTGCAGCCAGTGAGCAAAAGAAGAAGAGTAGCCTATATCGAGCATCTACGGCTCCATTTTGA 588 0.5238 MEEVWKDINLATLNDQVTRSATTHSNLGGVILQDFLARPFTMDPPNTILSSQTPSLYGAPSSPAPPLLTALSLSSHPHLHFDPHTQKPSHPHHPPPPSNHSCFTTPTTASLGAKRFAEPDCNLGDRRNKRMIKNRESAARSRARKQAYTNELEVEVEQLKEENARLKRQQKQLSEVAASEQKKKSSLYRASTAPF 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3835g00010 195 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 124 175 IPR004827 GO:0003700|GO:0006355
Vium3835g00010 195 SUPERFAMILY Leucine zipper domain 126 175 IPR046347 GO:0003700|GO:0006355
Vium3835g00010 195 SMART brlzneu 122 185 IPR004827 GO:0003700|GO:0006355
Vium3835g00010 195 Coils Coil 142 183 - -
Vium3835g00010 195 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 1 180 IPR043452 GO:0003700|GO:0045893
Vium3835g00010 195 Pfam bZIP transcription factor 126 179 IPR004827 GO:0003700|GO:0006355
Vium3835g00010 195 Gene3D - 125 182 - -
Vium3835g00010 195 MobiDBLite consensus disorder prediction 173 195 - -
Vium3835g00010 195 MobiDBLite consensus disorder prediction 51 70 - -
Vium3835g00010 195 CDD bZIP_plant_BZIP46 126 180 - -
Vium3835g00010 195 MobiDBLite consensus disorder prediction 76 107 - -
Vium3835g00010 195 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 129 144 IPR004827 GO:0003700|GO:0006355
Vium3835g00010 195 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 124 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3835g00010 Vium-Chr3835 66902 68369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3835g00010 1 146 bZIP Transcription Factor Family AT2G17770 41.026 2.77e-18 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium3835g00010 bZIP_1 1.5e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3835g00010 K14432 - gmx:102660922 183.726