Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3835g00001 ATGGAGTTTGTGCCAAATCCCTGTCCTTTACGTTCGTCTTCGCTCGGGAATCTCGTCGAGAGGGTTAAGCAGCTTGGTACCCTCGCCGTCTCCGCCGTCATTGGGAACATCTTCTCTGCGATCTTGACCTTCTGCTTTGCATTAGTGGGCACTTTGTTGGGGGCCTTGACTGGAGCTTTGATAGGACAAGAAACTGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGAGCCATATCAGGAGCTGTATTTTCCATTGAAGTGTTTGAATCGTCTCTTGTTCTTTGGCAATCTGACGAATCTGGAATTGGCTGCGTGTTATATTTGATTGATGTTATCGCCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATAGGTCCAGCCATGTTGAGTGCTGTTCAAAATCAGATGGGTGCTGTTGAAACCAGCTTTGATGAGGTTCAGAACATCTTTGACACCGGTGGTGCCAAAGGTTTGTCTGGAGATTTGGTTGAAAAAATCCCAATAATAAAAATTACAACTGACAACAATATTGATGCATCTGGTGATAGAGTTTCTTGTTCAGTTTGCCTGCAGGACTTTCAGCTTGGAGAAACAGTAAGAAGCTTACCTCATTGCCATCACATGTTTCACCTTCCTTGCATAGATAAGTGGCTCTTTAGACATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA 699 0.4549 MEFVPNPCPLRSSSLGNLVERVKQLGTLAVSAVIGNIFSAILTFCFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCVLYLIDVIASLLSGRLVRERIGPAMLSAVQNQMGAVETSFDEVQNIFDTGGAKGLSGDLVEKIPIIKITTDNNIDASGDRVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3835g00001 232 SMART ring_2 187 228 IPR001841 -
Vium3835g00001 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 232 IPR013083 -
Vium3835g00001 232 SUPERFAMILY RING/U-box 186 232 - -
Vium3835g00001 232 Pfam Ring finger domain 186 229 IPR001841 -
Vium3835g00001 232 CDD RING-H2_NIPL1-like 186 229 - -
Vium3835g00001 232 ProSiteProfiles Zinc finger RING-type profile. 187 229 IPR001841 -
Vium3835g00001 232 FunFam NEP1-interacting protein-like 1 147 232 - -
Vium3835g00001 232 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 17 231 IPR044523 -
Vium3835g00001 232 Pfam YMGG-like Gly-zipper 46 81 IPR027367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3835g00001 Vium-Chr3835 591 3074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3835g00001 17 232 C3H Transcription Factor Family AT5G66070 76.389 1.12e-117 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3835g00001 - - gmx:100807641 432.18