Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3827g00002 ATGGCGGTTGCTGAGAATGTTGGGGCCAAAATCGGTTCTTCGAGTCAGAGTTTGGACAGCGGTGTAGTGTCTGCGGATTCGAGTGAGGTCGAGAAATCGAAAACGAGAAGCGATCAGAATCTGACCAACGGTGTGTTCACCCATCAACAGCATCCAGATAGAGTTCCCAGCTCTACGACAGTTCCTAACGGAAATTACAGCTACAATACTCAGATGCACGCAAGTGGGGTGAACAACGATGGGTATGGGATGAATGGGGTCATGAGTGGGGAGAATGGGGGTGACAGTTTCAAGCATGACATGAGGGATTTGGAAGAGCTTTTATCAAAGTTGAACCCCATGGCTGAGGAATTTGTGCCCCCATCACTAACCAATACTCATGGCTTTTTAGCTGGACCTAATACTGGGTTTGGTTACACTAACAATTTTATGCTGCCGAATAACTTTGGCAGTGCTAATGGACAAATTAACAATAGAAGGAGGAAGAATGGCTATAATCCTGGGAAGCGAAGAGTGAATCATAAAATGGATATGGAGAAAAGAGAAGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTGGTTACTGAAGAGCAGCTGGCTGCTCTCTTTCTCAACTGTGGCCAGGTTGTTGATTGCCGTGTATGTGGAGATCCTAATTCTATTCTTCGATTTGCTTTCATTGAGTTTACAGATGAAGATGGAGCAAGGGCTGCCTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCACTGAGAGTGTTGCCTTCAAAAACTGCCATTGCACCTGTGAATCCAACATTTTTGCCTAGGTCTGAAGATGAAAGGGAAATGTGCTCAAGAACTATTTATTGCACAAATATCGACAAGAAGCTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGTGGAGAGGTTCATCGCTTGAGGCTTCTTGGGGATTATCATCATTCAACTCGAATTGCATTTGTAGAGTTTGCACTGGTAATTACTTGCTAA 1014 0.4398 MAVAENVGAKIGSSSQSLDSGVVSADSSEVEKSKTRSDQNLTNGVFTHQQHPDRVPSSTTVPNGNYSYNTQMHASGVNNDGYGMNGVMSGENGGDSFKHDMRDLEELLSKLNPMAEEFVPPSLTNTHGFLAGPNTGFGYTNNFMLPNNFGSANGQINNRRRKNGYNPGKRRVNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEDGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYHHSTRIAFVEFALVITC 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3827g00002 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 331 IPR000504 GO:0003723
Vium3827g00002 337 MobiDBLite consensus disorder prediction 9 28 - -
Vium3827g00002 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 332 IPR000504 GO:0003723
Vium3827g00002 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 252 IPR000504 GO:0003723
Vium3827g00002 337 SUPERFAMILY RNA-binding domain, RBD 187 332 IPR035979 GO:0003676
Vium3827g00002 337 SMART rrm1_1 188 258 IPR000504 GO:0003723
Vium3827g00002 337 MobiDBLite consensus disorder prediction 1 59 - -
Vium3827g00002 337 Gene3D - 149 264 IPR012677 -
Vium3827g00002 337 Gene3D - 277 334 IPR012677 -
Vium3827g00002 337 FunFam Polyadenylate-binding protein-interacting protein 11 152 264 - -
Vium3827g00002 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 262 IPR000504 GO:0003723
Vium3827g00002 337 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 106 332 - -
Vium3827g00002 337 CDD RRM1_CID8_like 185 264 IPR034823 -
Vium3827g00002 337 MobiDBLite consensus disorder prediction 37 59 - -
Vium3827g00002 337 Pfam Ataxin-2 C-terminal region 108 122 IPR009818 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3827g00002 Vium-Chr3827 20545 23293 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3827g00002 186 331 Eukaryotic Initiation Factors Gene Family AT1G34140 24.161 6.30e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3827g00002 - - vum:124835710 684.871