Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3821g00012 ATGCCTCACAGAACCACATACATTTTCCCGCGTCAATTCCCGGAGCGAGGGTTGGATGAATCTTCCAAACAGCTGTTAGATCAAGAGAAAAAGAAAATCGTCAACTCAATCAAACATGACACGTTTAACGTCGAAAGCGGCACTCCGAATAAACCGCTTCCGACTAAAGAAAATGACGTCGTTCTCTCCTCCGCTAAGCACTCCGCATTCTCCGACCTGTTCGCCGGCGGAGAGAAGTTCCGGACTAAACAAAAGCAAATCGCCGCGTTCTGCGATTGGCTAATCGACAAGAAAGTCAGCCACTCCGGCCACCACCAAGACCACGGCTGTGAAGGTGACCTACTTCTTCCGCGGGAAACCACCATCAAGGATGCCGTTGACCAGAGCTTTGACCGGCAGGTTTCGCTGCCGAGGCTATCGAGCGGGAGCAGCTATGCTGGAAGCTTGTTTTCGGGGACGACGTTTGATTGCAATTTTTCCAGCGGAATTAAGGAGGAAACGTCGTCGTCTCGCACTCTCACTACTATTGCTGCCCCGAGGCACAAGGATGATGAGGAAGAGGAGGTGGAGGAAGAGAGCATGGAGAAGTTAGCGAAGAAGTCGAAAGAGAGCTACATCTTGCAACTCACGTTAGCGAAGAGGCTCAACTTTTTGGCTAGCCTCGTCACTGAACCTGTTCTCACTCCAGGAACTGAAACCTGGGATGCCGAATCCGTTTCTTACCGCCTATGGGTGAGTGGATGTTTATCTTACACAGACAAGATATCTGACGGGTTTTATAACATACTGGGGATGAATCCATATCTTTGGGTGATGTGTAATGATGTCGAGGACGGTAGAAGGATACCTACTTTGATGTCGCTCAAAGCGGTTGGGCCCAGCGAAACTTGTATGGAGGTGGTGCTTGTTGATAGACGCGAGGACTCTCGCTTGAAGCTGCTTCAAGATAAGGCGCAAGAGTTGTATTGTGCTTCTGAGAACACCTTGGTGTTAGTGGAGCAGCTAGGGAAACTGGTAGCCATTTATATGGGGGGTATGTTCCCGGTGGAGCAAGGCGATCTTCACAAGCGCTGGAAACTGGTTAGTAAGAAGTTGAGGACTTTGCGCAAGTGTGTTGTGTTTCCCATTGGCAGCCTGTCTACTGGACTTTGTAGGCATCGGGCAATACTTTTTAAGAGATTGGCAGATTACGTAGGTTTGCCCTGTCGTATTGCTCGTGGTTGCAAGTATTGTGTTGCAGATCATAGATCTTCTTGCCTAGTCAAAATTAAGGATGACAAACAGCTCTCAAGGGAGTATGTGGTTGACCTAGTTGGGGAACCGGGAAATGTCCATGGACCAGATTCCTCAATAAATGGAGCATATGTTTCTTCAATGCCTTCCCCGTTTCAAATTTGTCACTTAAAAGAATCACAATCAACTTTTATGGATGACATGGCAAGTTCTGAATCCGCAGGTTCCATTGACAGACCTGTTAATCCTGAAAATCTTCCGTATTCAGGCTGTGGAAATAATGATCAACAAGCTAAAGAAACTGATTTGCTGAGAAGCTCCATTTATGGTTCAGTTGATCAAATCTGTGAAGTTACAGAACCATCTCTAATTCCTTTTGGATTAGAAGGGAATGACGAGGAATGCTCAGTTATTAGTTCGGTTTTGCCTACCATCCATGAAGATGATTCTAAAATTCTCCATCCAGACATCGAAGCATCACTAAATGAATATCCAAGCCTTAGGGAAGATGTAGTACAATTACAAGAAATTTCCAACAATGAGATCATTGTAAATGGAAGTTCTGCGGTGAAAAGTAGTTTTAAGAGATCTATACTTGGTTCATCCAGCCAGTCAGAACTGAAACAGGTAGACAATAGAAGTGAAAACAAGGGTTGTTTACCTTCTGGGAATATTCCAAGATATTTGAATCTTGAACCATCACTTGCAATGGACTGGCTTGAGATATCTTGGGAGGATTTACGAATTAAAGAGCGTGTTGGTGCTGGTTCATTCGGTACAGTGTACCGTGCTGAATGGCATGGATCGGATGTTGCAGTCAAGGTTTTAACAGTTCAGGATTTCCATGAAGATCAGTTGAAGGAGTTCCTGAGAGAGGTTGCAATAATGAAGCGGGTTCGCCATCCGAATGTGGTGCTCTTCATGGGCTCTGTTACAAAACGCCCCCATCTATCAATAGTGACAGAGTATTTGCCTAGGGGTAGTTTATACCGCCTGATACACAGACCAGCATCTGGTGAAATTCTGGACAAGAGGAAGAGACTGCGGATGGCATTGGATGTGGCTAAAGGAATCAATTATCTCCACTGTCTGAAACCTCCAATTGTGCACTGGGATCTCAAATCCCCAAACTTGTTAGTGGATAAAAATTGGACTGTGAAGGTTTGTGATTTTGGATTGTCCAGATTTAAGGCAAACACTTTCATACCGTCCAAATCAGTTGCTGGAACACCCGAGTGGATGGCTCCAGAATTTCTTCGTGGAGAACCCTCCAATGAGAAATCTGACGTATACAGTTTTGGAGTTATCCTGTGGGAACTTGTGACCATGCAACAGCCATGGAGTGGACTTAGCCCTGCACAGGTAGTTGGAGCTGTTGCTTTCCAGAATAGGAGGCTGGCTATCCCTCCAAACATCTCCCCAGCATTGGCCTCCCTCATGGAATCTTGTTGGGCGGATGACCCCAGTGAGAGGCCATCTTTTGGTAGCATAGTTGAGTCACTAAAAAAGCTGGTAAAATCTCCGGCAGAACTGATAAAGATGGGAGATACATAG 2787 0.4578 MPHRTTYIFPRQFPERGLDESSKQLLDQEKKKIVNSIKHDTFNVESGTPNKPLPTKENDVVLSSAKHSAFSDLFAGGEKFRTKQKQIAAFCDWLIDKKVSHSGHHQDHGCEGDLLLPRETTIKDAVDQSFDRQVSLPRLSSGSSYAGSLFSGTTFDCNFSSGIKEETSSSRTLTTIAAPRHKDDEEEEVEEESMEKLAKKSKESYILQLTLAKRLNFLASLVTEPVLTPGTETWDAESVSYRLWVSGCLSYTDKISDGFYNILGMNPYLWVMCNDVEDGRRIPTLMSLKAVGPSETCMEVVLVDRREDSRLKLLQDKAQELYCASENTLVLVEQLGKLVAIYMGGMFPVEQGDLHKRWKLVSKKLRTLRKCVVFPIGSLSTGLCRHRAILFKRLADYVGLPCRIARGCKYCVADHRSSCLVKIKDDKQLSREYVVDLVGEPGNVHGPDSSINGAYVSSMPSPFQICHLKESQSTFMDDMASSESAGSIDRPVNPENLPYSGCGNNDQQAKETDLLRSSIYGSVDQICEVTEPSLIPFGLEGNDEECSVISSVLPTIHEDDSKILHPDIEASLNEYPSLREDVVQLQEISNNEIIVNGSSAVKSSFKRSILGSSSQSELKQVDNRSENKGCLPSGNIPRYLNLEPSLAMDWLEISWEDLRIKERVGAGSFGTVYRAEWHGSDVAVKVLTVQDFHEDQLKEFLREVAIMKRVRHPNVVLFMGSVTKRPHLSIVTEYLPRGSLYRLIHRPASGEILDKRKRLRMALDVAKGINYLHCLKPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFIPSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLSPAQVVGAVAFQNRRLAIPPNISPALASLMESCWADDPSERPSFGSIVESLKKLVKSPAELIKMGDT 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3821g00012 928 Pfam Protein tyrosine and serine/threonine kinase 658 912 IPR001245 GO:0004672|GO:0006468
Vium3821g00012 928 SUPERFAMILY Protein kinase-like (PK-like) 636 911 IPR011009 -
Vium3821g00012 928 Gene3D Transferase(Phosphotransferase) domain 1 737 923 - -
Vium3821g00012 928 ProSiteProfiles Protein kinase domain profile. 658 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3821g00012 928 FunFam Serine/threonine-protein kinase isoform 1 648 736 - -
Vium3821g00012 928 SMART serkin_6 658 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3821g00012 928 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 229 917 - -
Vium3821g00012 928 PRINTS Tyrosine kinase catalytic domain signature 839 861 IPR001245 GO:0004672|GO:0006468
Vium3821g00012 928 PRINTS Tyrosine kinase catalytic domain signature 773 791 IPR001245 GO:0004672|GO:0006468
Vium3821g00012 928 PRINTS Tyrosine kinase catalytic domain signature 732 745 IPR001245 GO:0004672|GO:0006468
Vium3821g00012 928 PRINTS Tyrosine kinase catalytic domain signature 883 905 IPR001245 GO:0004672|GO:0006468
Vium3821g00012 928 CDD STKc_MAP3K-like 664 912 - -
Vium3821g00012 928 Gene3D Phosphorylase Kinase; domain 1 651 735 - -
Vium3821g00012 928 ProSitePatterns Protein kinases ATP-binding region signature. 664 685 IPR017441 GO:0005524
Vium3821g00012 928 ProSitePatterns Serine/Threonine protein kinases active-site signature. 779 791 IPR008271 GO:0004672|GO:0006468
Vium3821g00012 928 Pfam Ethylene-responsive protein kinase Le-CTR1 236 444 - -
Vium3821g00012 928 FunFam Serine/threonine-protein kinase CTR1 737 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3821g00012 Vium-Chr3821 106252 113871 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3821g00012 1 926 MAP Kinase Kinase Kinase AT4G24480 56.455 0.0 1047
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vium3821g00012 PK_Tyr_Ser-Thr 1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3821g00012 - - gmx:100808435 1592.4