Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3821g00005 ATGTCGGAGAAGAAGACCAGAGTGTCTTTTACGGAAAAAGATGCTGTCGCGCTGATGCAGAGGTACGACCCAAGTACAGTGTTTATCTTACTTCAAGAAGTTGCGCATTACGCTAAGCCAAAGATTGATTGGAGCGAGTTGGTGAAGAAAAGCGCAACTGGGATTTCTAATGTTAGGGAATATCAAATGCTGTGGCGGCATTTGGCCTACCGGCATTCTTTGCCGGAAAATTTTGAAGTTGGGGCTGAACCTCTGGATGATGACAGTGACTTAGAGTGTGAGCTAGAAGAATTACCTCCTGTTAGTGTGGAATCTGCATCAGAGGCGGCTGCATGTGTGAAGGTAATGATTGCTTCTCGCACACTCAGTGACTCTGCCCCTAGTAGCTCAACAATCGAGGCTCCATTGACTATAAATGTTCCAGTTTGCCATTCATCTGCAACACTTATTGAAAGTTCACAACCCTCTAATTTGATGCAAGGGACAAACATTGTTTTTCCAGTCACTGTTCAGAGACAAACATTGCCAACACACCCTGTACCACCAACAGATGGTATTGAATCTAAGGGATTAGTTGGTGGTAATTTGGCGTCCAAAAGAAAACGGAAAACATGGTCAGAGGAAGAGGACATACAACTACGAGCTGCTGTTCAGAGATGGGGCGAAGGGAATTGGGCAACCATGGCAAAAGGAGACAATTTTCCTATTAAGAGAAGTCCTACACAGTTAGCACAGAGGTGGAGCATTTTACGAAAGAAAGATGGCACTGTCAATTCTGGAACCATATCAACCAGCTCACAATATACTACTGCTGAACAACTGGCAACCCGACACTCTTTATCTTTAGCCCTTGATATGCCATTCAAAAAGTTAACTGCTCCTGGAGTGTCAGATCCTGTTAAGACATCCACATCAGTTAAAAATCAAGTGCAGATTAGAAATACTGTGGAGAAGGTTGCCACTAGTTTTGTACCACCTCAACAGCCATCTCGGCAAGCTTCTTTGTTGGGATCTGATTCTCATTCTCATGTAAAACCCAAACTAGTAGACGAAAAACTAATCTCGAAGGGTAATATAATTTCAAATCCTGTGTTAAAATCTACCACAGCTGCTCCTGGGACACGAATTGATTCACCTTCAAATACTATATCACATGTTAAAATTGCTCCAGTAAAACACAACGTAGACACCAAGCCTGCAGTAAGCTCTTTGGCAAAACCATCCGTTTCTACCAATATGCCTTCTGATCCAAAGAACAAACCGACTACTTCTTTGACTGATAAAGTTCCATTGGAGCAAGATGCTAATTCCACTAAAGACGATACCAGCTCCAGACCGAAAGATCAAACACCAGAAAACGAAGCTCCTAAAGTTACTATTGACAGCCAGGTCAATAGCAACTTAGAGAAGGGAAGATTAGATATAGGTCAAGCGAAGATTGTGCCTGTTAGTAGTGGAGAGGAAAGTTTGAAAGATAAAGCAAGTCCAGTCACAAATGAAAAACAACCAAGTGTTACTAAAGCAAATGCAGCGGTGTCCGAAAACCAAGGAACTGTTAAGAATGCTACTGAGAATAGCAACCTTGACAAAGGAAACCTAACTTCTAATCAAGACAAGAAAACTTCAATCAATGAAAGTTCAAACAATCAAAACATAAATGACAAACATGTAAATTTGCCAGTACAAGATGAAGGCAGCCAAAGTGACAAGGTGGTAAAACTGATGGAGAATGTTGAGTGA 1740 0.4172 MSEKKTRVSFTEKDAVALMQRYDPSTVFILLQEVAHYAKPKIDWSELVKKSATGISNVREYQMLWRHLAYRHSLPENFEVGAEPLDDDSDLECELEELPPVSVESASEAAACVKVMIASRTLSDSAPSSSTIEAPLTINVPVCHSSATLIESSQPSNLMQGTNIVFPVTVQRQTLPTHPVPPTDGIESKGLVGGNLASKRKRKTWSEEEDIQLRAAVQRWGEGNWATMAKGDNFPIKRSPTQLAQRWSILRKKDGTVNSGTISTSSQYTTAEQLATRHSLSLALDMPFKKLTAPGVSDPVKTSTSVKNQVQIRNTVEKVATSFVPPQQPSRQASLLGSDSHSHVKPKLVDEKLISKGNIISNPVLKSTTAAPGTRIDSPSNTISHVKIAPVKHNVDTKPAVSSLAKPSVSTNMPSDPKNKPTTSLTDKVPLEQDANSTKDDTSSRPKDQTPENEAPKVTIDSQVNSNLEKGRLDIGQAKIVPVSSGEESLKDKASPVTNEKQPSVTKANAAVSENQGTVKNATENSNLDKGNLTSNQDKKTSINESSNNQNINDKHVNLPVQDEGSQSDKVVKLMENVE 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3821g00005 579 MobiDBLite consensus disorder prediction 397 471 - -
Vium3821g00005 579 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 197 255 IPR017930 -
Vium3821g00005 579 ProSiteProfiles Myb-like domain profile. 197 251 IPR001005 -
Vium3821g00005 579 SMART sant 201 253 IPR001005 -
Vium3821g00005 579 MobiDBLite consensus disorder prediction 401 432 - -
Vium3821g00005 579 CDD SANT_TRF 203 252 - -
Vium3821g00005 579 MobiDBLite consensus disorder prediction 455 470 - -
Vium3821g00005 579 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 2 557 - -
Vium3821g00005 579 MobiDBLite consensus disorder prediction 433 454 - -
Vium3821g00005 579 MobiDBLite consensus disorder prediction 496 565 - -
Vium3821g00005 579 MobiDBLite consensus disorder prediction 483 571 - -
Vium3821g00005 579 Pfam Myb-like DNA-binding domain 202 247 IPR001005 -
Vium3821g00005 579 Gene3D - 196 256 - -
Vium3821g00005 579 SUPERFAMILY Homeodomain-like 200 253 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3821g00005 Vium-Chr3821 17764 27260 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium3821g00005 Myb_DNA-binding 1.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3821g00005 - - gmx:100799956 732.635