Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3820g00002 ATGGAAAAGGTGGCGGCGCCTCCGATTCTGATGCAGCGTAAGCGCGATCTGTCGTACGGCGTCGTTGCGGGGAGTCCGAGCGAGAGCTGGAAGTGGGAGTGGGACAGCGTGCGGTTCGCGGGGAAGCCTCCGAGCGACGACGTCGTGTTCGAGGAGGAGAGCGTCGCGGCGGTGGCTCCTCTGCAGCTCAACCTCGCGGGGAGGGTGAGCGGCGGTGGTAACAAGAGAGTGCGCTCGGGGTCTCCCGGAACGGCGACGTATCCGATGTGTCAGGTGGATAACTGCAGGGAGGATCTGTCGAAGGCGAAGGACTATCACAGGAGGCACAAGGTGTGCGAGGCGCATAGCAAAGCCTCCAAGGCGCTTCTTAGCAACCAAATGCAAAGGTTTTGTCAGCAGTGTAGTAGGTTTCACCCGCTGTCCGAGTTTGATGAGGGGAAACGGAGTTGCCGCCGTAGACTCGCTGGACACAACCGCCGCCGGAGGAAAACGCAGCCGGAGGATGTTACTTCCGCCACGCAGGCCCCCGCCGCCGCCGTCGCAGCAGCAGCAAATTTGGAAATCTTCAACTTGTTGACTGCAATAGCGGGAGCTTCGCAGGGAAAATTTGAAGAAAGATCACAAGTTCCGGATAGAGAGCAGCTTGTGCAGATTCTCAACAGGATACCTTTGCCTGCGGATCTTGCAACCAAGTTGCGGGATGCTGGTAATGTCAACGGGAAAAAGGATCATGTACAATCGGAGACACCATCCTCCTATCACCATCATGATCAACTGAACCACACCCCAGCTGCCCCATTAACTATGGACTTACTTGGTGTTCTTTCCACGAGTCTGTCTGGGTCTGGCCCTGATGCCAATGCGTCCCCCTCTCAAAATCGTAGCTGCAGCAGTGATGGCGGTAGTGTTAAATCTAGGAGTAGTGCTGATCAGACGAGACAACAGCACTTCTTTTCAGTTGGCGGAGAAAGAAGCAGTAGCAGTTCCCAGTCTCCAGTTGAAGATTCAGACTGCCAGGAGGATGTTAGAGTTAATTTGCCGCTGCAACTCTTTAGCTCCTCCCCAGAAGAGGACAGCTTGCCTAAACTTGCATCTTCAAGAAAGTATTTCTCGTCTGACAGTAGTAACCCTGCAGAAGAGAGGTCACCATCGTCTTCTCCTCCTTCTCCTCCTGTTGTGGAGATGCAGTTTGATTTGCAGGGTGGTGCTACAGGTCTAAAGCCGGAGAGCATCTCTTCTGGAAGAGGAGTTAATTCAAACAAGGAAACTAGCCAAAGTCATAGTTGTAATATCTCTCTCGATCTATTTAAAGGGTCAAATAAAAGGATCCAACAACCTAGTTGGCTTCAAAGTGTTCCATTTCAAGCTGGGTATACATCTTCGGGCTCTGATCATTCACCTCCCAGTTTGAATTCAGATGCTCAGGATCGCACTGGTAGAATAATGTTTAAACTATTTGACAAGCATCCAAGCCATTTCCCAGAAACATTGCGAGCACAGATTTACAGTTGGCTTTCTAATAGGCCATCCGACATGGAGAGCTACATACGGCCTGGTTGTGTGGTCCTATCACTTTATGCTTCAATGTCTTGTGCTGCCTGGGAGAAACTAGAGGAAAACTTCCTCCAACATGTTCATTCTTTAATTCAAAATTCAGATTCTGACTTTTGGAGAAGTGGAAGGTTTCTAGTACATTCTGGCAGTCAATTGGCTTCACACAAAGATGGGAAGGTACGCATATGCAAACCATGGAGAACGTGGAAGTCGCCAGAGTTGATATCTGTGTCCCCTTTGGCAATTGTTAGTGGACAGGAAACCTCTATTTCATTGAAGGGCAGAAACCTGTCAACTCCTGGCACAAAGATCCACTGTACGGGTACTGGCTCTTACTCATCAGCGGAAGTCATCAGATCTTCATATCCTGGTGTGGTGTATGATAATATAAAGTTAAGTGGTTTTAAAGTTCAGGATGTTTCACCCGGTGTTGTGGGTCGCCTTTTTATTGAGATTGAAAATGGTTTCAAGGGTAACAGTTTTCCAGTGATAATAGCCAATGAGACCATTTGTGAGGAATTGAGACCACTTGAGTCTGAATTTAACGAGGAGGAAAAAATATGCGATGCCATTTCAGAAGAGCATGAACATCATTTTGGAAGGCCAAGATCAAGGGAGGAGGCTTTGCATTTTTTGAATGAGCTTGGCTGGCTGTTCCAAAGAGAAAGGTTCTCATATATGCATGAGGTTCCCTGTTATTCGCTTGACAGGTTCAAATTTGTACTCACATTTGCTGTGGAAAGAAACTGTTGTATGGTAGTCAAAACCCTTCTCGATGTACTGGTTGATAAACACTTGCAAGGGGAGTCGTTGTCAACAGGGTCAGTGGAAATGTTGAATGCAATCCAACTCTTAAATAGAGCAGTGAAAAGAAAGAACATAGGCATGGTTGATTTGCTCATTCACTATTCTTTACCAAACAAAAATAGTACATCCAGGAAATATGTATTTCCTCCTAATCTTGAGGGTCCTGCTGGTATTACACCCTTGCACTTGGCAGCATGCACGTCTGGTTCTGAGGGTGTAGTTGACTTTTTAACAAGTGACCCACAGGAGATTGGCTTGAAGTGCTGGGAATCCCTTGTGGATGCTAACGGGCAGACTCCACATGCGTATGCTATGATGAGGAATAATAACTCTTATAATGTGCTGGTTGCCCGTAAACTTGCTGATAGACGAAGGGCTGAAATTTCAGTAACAATTGAGAATGAGATAGAGCAAGCCTCTCTGAGGGTAGAGCTTAACCAAAAGCAAAGTAACCTACTCAAACGAGGTCAGAGTTCTTGTGCCAAGTGTGTGAGTGCAGAAATTCGCTACAACAGAAGATTTTCAGGTTCACACGGTTTGATTCACCGCCCCTTTATTTATTCAATGCTAGCCGTTGCTGCAGTTTGTGTATGTGTTTGTGTGTTCTTCCGTGGACGCCCTTTCGTAGGCTCAGTTGCTCCCTTCAGTTGGGAAACCCTGGATTTTGGCACAATGTAA 3039 0.4745 MEKVAAPPILMQRKRDLSYGVVAGSPSESWKWEWDSVRFAGKPPSDDVVFEEESVAAVAPLQLNLAGRVSGGGNKRVRSGSPGTATYPMCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLSNQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSATQAPAAAVAAAANLEIFNLLTAIAGASQGKFEERSQVPDREQLVQILNRIPLPADLATKLRDAGNVNGKKDHVQSETPSSYHHHDQLNHTPAAPLTMDLLGVLSTSLSGSGPDANASPSQNRSCSSDGGSVKSRSSADQTRQQHFFSVGGERSSSSSQSPVEDSDCQEDVRVNLPLQLFSSSPEEDSLPKLASSRKYFSSDSSNPAEERSPSSSPPSPPVVEMQFDLQGGATGLKPESISSGRGVNSNKETSQSHSCNISLDLFKGSNKRIQQPSWLQSVPFQAGYTSSGSDHSPPSLNSDAQDRTGRIMFKLFDKHPSHFPETLRAQIYSWLSNRPSDMESYIRPGCVVLSLYASMSCAAWEKLEENFLQHVHSLIQNSDSDFWRSGRFLVHSGSQLASHKDGKVRICKPWRTWKSPELISVSPLAIVSGQETSISLKGRNLSTPGTKIHCTGTGSYSSAEVIRSSYPGVVYDNIKLSGFKVQDVSPGVVGRLFIEIENGFKGNSFPVIIANETICEELRPLESEFNEEEKICDAISEEHEHHFGRPRSREEALHFLNELGWLFQRERFSYMHEVPCYSLDRFKFVLTFAVERNCCMVVKTLLDVLVDKHLQGESLSTGSVEMLNAIQLLNRAVKRKNIGMVDLLIHYSLPNKNSTSRKYVFPPNLEGPAGITPLHLAACTSGSEGVVDFLTSDPQEIGLKCWESLVDANGQTPHAYAMMRNNNSYNVLVARKLADRRRAEISVTIENEIEQASLRVELNQKQSNLLKRGQSSCAKCVSAEIRYNRRFSGSHGLIHRPFIYSMLAVAAVCVCVCVFFRGRPFVGSVAPFSWETLDFGTM 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3820g00002 1012 MobiDBLite consensus disorder prediction 237 255 - -
Vium3820g00002 1012 FunFam Squamosa promoter-binding-like protein 14 81 151 - -
Vium3820g00002 1012 MobiDBLite consensus disorder prediction 411 425 - -
Vium3820g00002 1012 ProSiteProfiles Zinc finger SBP-type profile. 87 164 IPR004333 GO:0003677
Vium3820g00002 1012 Pfam SBP domain 90 163 IPR004333 GO:0003677
Vium3820g00002 1012 SUPERFAMILY SBT domain 88 168 IPR036893 GO:0003677|GO:0005634
Vium3820g00002 1012 SUPERFAMILY Ankyrin repeat 759 905 IPR036770 -
Vium3820g00002 1012 MobiDBLite consensus disorder prediction 153 174 - -
Vium3820g00002 1012 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 29 804 IPR044817 GO:0003677
Vium3820g00002 1012 MobiDBLite consensus disorder prediction 276 425 - -
Vium3820g00002 1012 MobiDBLite consensus disorder prediction 237 261 - -
Vium3820g00002 1012 Gene3D - 756 946 IPR036770 -
Vium3820g00002 1012 MobiDBLite consensus disorder prediction 346 382 - -
Vium3820g00002 1012 Gene3D - 80 151 IPR036893 GO:0003677|GO:0005634
Vium3820g00002 1012 MobiDBLite consensus disorder prediction 276 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3820g00002 Vium-Chr3820 17494 23428 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3820g00002 3 1012 SBP-box Gene Family AT1G20980 52.309 0.0 944
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium3820g00002 SBP 1.4e-29 No_clan