Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3819g00004 ATGGTTTCCACCAGAGCCGAGAAGAGTGTAAAATCAAATTCTCCTGTCATGAATGGCGTTAAAGAAACTAAATCAAATTCCCCTGTTACGAATGGCGTTAAAGAAGATAAGGATTTAAAGAAATTGAAAGAATCGAAGGCTTCTCCAACAGCGCCGCGGAGATCGAGCGCTCGAATTCAAGCTCTGCAGAAAGCGGAGAAGTCACTAGCCGTACCAAATGCAGTGGTAGTTAAAGAGGAGGACAAAGACAATGTTAAAGAAGGGAAGGGTAAGAAGCGCAGTAGAAAGAGTGGCCCTGAAGAGAGTTTGGTGGTGGAGGAACAGTCTGTTTTACTGTTGAAGAAAAAGCCATTCGCTTGTGGCAAGGATGAGATGAAAGTAGAGAATGCGGTTGGACAGCTTGGAGATAAGAGTGATACAGTTAAAGTTAAAGATACCATACGTTTATTCAATAAACATTATCTGCAATTTGTTCAGGAAGAAGAAAAAAGGTGTGTAAGGGCTGAGACTCAGCCTAAGGATGCTAACTCTCCTAAGAAGTCTTCTCAGAAGGCTTCAAAATCAAAGAAAGGTGCTCCACATGTAGATTCAAAGAAACCTGCCAAACGACCAGATCTTAAGGCCGTATCCAAGATGATGGAAAATAATGAAATACTGTACTCTGAGAAAAGAATTGGCAGCATTCCAGGTATTGAAGTTGGGTATCAGTTCTATTCTCGTGCTGAAATGGTTGCAGTTGGTTTTCATAGTCACTGGTTAAATGGCATTGATTATATGGGCCAGTCTTATGCCAAAGCGTATAGCTTTGAATTTCCAATTGCTATTGCAATTGTTTTGTCGGGCATGTATGAGGATGACCAGGACAATGCTGAAGATGTTGTGTACACTGGTCAAGGTGGTCATAATCTTACTGGTGATAAGCGTCAAATTCAGGATCAAAAGTTGGAGCGTGGGAACCTAGCTCTCAAGAATTGTGTGGAGCAATGTGTGCCTGTTAGAGTGATTCGAGGTCATGATTCTTCAAGTAGTTACTCTGGGAAAGTATACACTTATGATGGCTTGTACAAGGTTGTCAATTATTGGTGTGAGACAGGGCTATCTGGATTTAAAGTCTTTAAGTTTCGACTTAGGAGGCTTGAAGGGCAACCTACATTAACCACAAATCAGGTTTATTTTACTCATGGACGTGTTCCTCAATCTATAGCAGAAATAAGAGGATTGGTTTGTGAGGATATCACCGGAGGTCAAGAAGATATACCCATTCCAGCTACAAATGTGGTAGACGATCCCCCTGTTCCACCTACAGGTTTCACATATTGCAAGTCTCTTAAGGTAGCAAAAAATGTGAAGCTTCCAACTAATGCCGTTGGATGCAAATGCAAAGGCTCCTGTAATGACCCAACAACATGTGCATGTGCTCTGCGTAATGGCTCTGATTTTCCCTATGTATCTCGGAATGGTGGCAGGTTAGTAGAAGCTAAAGATGTAGTATTTGAATGTGGCCCCAAATGTGGTTGTGGTCCTGGTTGTGTCAACCGAACTTCTCAAAAAGGACTTAGATATCGTCTGGAGGTTTTCCGGACTGCCAAAAAGGGATGGGCTGTCAGATCCTGGGATTTTATACCTTCTGGAGCACCAGTTTGTGAGTACACAGGAATACTTGCTAGAACGGAAGACATGGATAGCATGTTGGAAAACAATTATATTTTTGAGATAGATGGCTTGCAAACGATCAAGGGCCTTGGTGGTAGAGAGAGGCGGTCACAAGATGGAGAAATTCCTGAAGATATATTGAACAAATATGATGATCTAAGTTCCGAAAGTGTGCCAGAGTTTTGCATTGATGCTGGATCTACTGGAAATATTGCTAGATTTATAAACCATTGTTGTGAGCCTAATCTGTTCGTGCAGTGTGTTTTGAGCACACACGATGATTTGAGGTTGGCTCGTGTAATGCTGTTTGCTGCGGACAACATACCTCCTTTGCAGGAATTAACGTATGACTATGGTTACGCTCTAGATAGCGTGTTGGGCTCCGATGGGAAGATCAAGCAAATGCCATGCTATTGTGGGGCCGCCGACTGCAGGAAGCGATTATTCTAA 2103 0.4242 MVSTRAEKSVKSNSPVMNGVKETKSNSPVTNGVKEDKDLKKLKESKASPTAPRRSSARIQALQKAEKSLAVPNAVVVKEEDKDNVKEGKGKKRSRKSGPEESLVVEEQSVLLLKKKPFACGKDEMKVENAVGQLGDKSDTVKVKDTIRLFNKHYLQFVQEEEKRCVRAETQPKDANSPKKSSQKASKSKKGAPHVDSKKPAKRPDLKAVSKMMENNEILYSEKRIGSIPGIEVGYQFYSRAEMVAVGFHSHWLNGIDYMGQSYAKAYSFEFPIAIAIVLSGMYEDDQDNAEDVVYTGQGGHNLTGDKRQIQDQKLERGNLALKNCVEQCVPVRVIRGHDSSSSYSGKVYTYDGLYKVVNYWCETGLSGFKVFKFRLRRLEGQPTLTTNQVYFTHGRVPQSIAEIRGLVCEDITGGQEDIPIPATNVVDDPPVPPTGFTYCKSLKVAKNVKLPTNAVGCKCKGSCNDPTTCACALRNGSDFPYVSRNGGRLVEAKDVVFECGPKCGCGPGCVNRTSQKGLRYRLEVFRTAKKGWAVRSWDFIPSGAPVCEYTGILARTEDMDSMLENNYIFEIDGLQTIKGLGGRERRSQDGEIPEDILNKYDDLSSESVPEFCIDAGSTGNIARFINHCCEPNLFVQCVLSTHDDLRLARVMLFAADNIPPLQELTYDYGYALDSVLGSDGKIKQMPCYCGAADCRKRLF 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3819g00004 700 Pfam SET domain 532 670 IPR001214 GO:0005515
Vium3819g00004 700 SMART set_7 521 676 IPR001214 GO:0005515
Vium3819g00004 700 Pfam SAD/SRA domain 225 382 IPR003105 -
Vium3819g00004 700 Gene3D SET domain 404 700 IPR046341 -
Vium3819g00004 700 ProSiteProfiles Pre-SET domain profile. 456 518 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium3819g00004 700 MobiDBLite consensus disorder prediction 31 48 - -
Vium3819g00004 700 SMART G9a_1 221 382 IPR003105 -
Vium3819g00004 700 MobiDBLite consensus disorder prediction 166 208 - -
Vium3819g00004 700 ProSiteProfiles SET domain profile. 521 670 IPR001214 GO:0005515
Vium3819g00004 700 MobiDBLite consensus disorder prediction 76 102 - -
Vium3819g00004 700 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 42 700 IPR025794 GO:0016571
Vium3819g00004 700 SMART preset_2 409 505 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium3819g00004 700 Pfam Pre-SET motif 413 513 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium3819g00004 700 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 22 693 - -
Vium3819g00004 700 ProSiteProfiles Post-SET domain profile. 684 700 IPR003616 -
Vium3819g00004 700 MobiDBLite consensus disorder prediction 189 208 - -
Vium3819g00004 700 MobiDBLite consensus disorder prediction 1 105 - -
Vium3819g00004 700 ProSiteProfiles YDG domain profile. 226 378 IPR003105 -
Vium3819g00004 700 SMART PostSET_3 684 700 IPR003616 -
Vium3819g00004 700 SUPERFAMILY SET domain 405 676 IPR046341 -
Vium3819g00004 700 MobiDBLite consensus disorder prediction 1 30 - -
Vium3819g00004 700 SUPERFAMILY PUA domain-like 208 400 IPR015947 -
Vium3819g00004 700 Gene3D - 208 395 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3819g00004 Vium-Chr3819 32498 50084 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3819g00004 212 700 EF-hand Containing Proteins AT5G13960 66.531 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium3819g00004 SAD_SRA 5.4e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3819g00004 K11420 - gmx:100796701 1055.05