Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3819g00002 ATGGTTTCCACCAGAGCCGAGAAGAGTGTAAAATCAAATTCTCCTGTCATGAATGGCGTTAAAGAAACTAAATCAAATTCCCCTGTTACGAATGGCGTTAAAGAAGATAAGGATTTAAAGAAATTGAAAGAATCGAAGGCTTCTCCAACAGCGCCGCGGAGATCGAGCGCTCGAATTCAAGCTCTGCAGAAAGCGGAGAAGTCACTAGCCGTACCAAATGCAGTGGTAGTTAAAGAGGAGGACAAAGACAATGTTAAAGAAGGGAAGGGTAAGAAGCGCAGTAGAAAGAGTGGCCCTGAAGAGAGTTTGGTGGTGGAGGAACAGTCTGTTTTACTGTTGAAGAAAAAGCCATTCGCTTGTGGCAAGGATGAGATGAAAGTAGAGAATGCGGTTGGACAGCTTGGAGATAAGAGTGATACAGTTAAAGTTAAAGATACCATACGTTTATTCAATAAACATTATCTGCAATTTGTTCAGGAAGAAGAAAAAAGGTGTGTAAGGGCTGAGACTCAGCCTAAGGATGCTAACTCTCCTAAGAAGTCTTCTCAGAAGGCTTCAAAATCAAAGAAAGGTGCTCCACATGTAGATTCAAAGAAACCTGCCAAACGACCAGATCTTAAGGCCGTATCCAAGATGATGGAAAATAATGAAATACTGTACTCTGAGAAAAGAATTGGCAGCATTCCAGGTATTGAAGTTGGGTATCAGTTCTATTCTCGTGCTGAAATGGTTGCAGTTGGTTTTCATAGTCACTGGTTAAATGGCATTGATTATATGGGCCAGTCTTATGCCAAAGCGTATAGCTTTGAATTTCCAATTGCTATTGCAATTGTTTTGTCGGGCATGTATGAGGATGACCAGGACAATGCTGAAGATGTTGTGTACACTGGTCAAGGTGGTCATAATCTTACTGGTGATAAGCGTCAAATTCAGGATCAAAAGTTGGAGCGTGGGAACCTAGCTCTCAAGAATTGTGTGGAGCAATGTGTGCCTGTTAGAGTGATTCGAGGTCATGATTCTTCAAGTAGTTACTCTGGGAAAGTATACACTTATGATGGCTTGTACAAGGTTGTCAATTATTGGTGTGAGACAGGGCTATCTGGATTTAAAGTCTTTAAGTTTCGACTTAGGAGGCTTGAAGGGCAACCTACATTAACCACAAATCAGGTTTATTTTACTCATGGACGTGTTCCTCAATCTATAGCAGAAATAAGAGGATTGGTTTGTGAGGATATCACCGGAGGTCAAGAAGATATACCCATTCCAGCTACAAATGTGGTAGACGATCCCCCTGTTCCACCCTCAGGTTTCACATATTGCAAGTCTCTTAAGGTAGCAAAAAATGTGAAGCTTCCAACTAATGCCGTTGGATGCAAATGCAAAGGCTCCTGTAATGACCCAACAACATGTGCATGTGCTCTGCGTAATGGCTCTGATTTTCCCTATGTATCTCGGAATGGTGGCAGGTTAGTAGAAGCTAAAGATGTAGTATTTGAATGTGGCCCCAAATGTGGTTGTGGTCCTGGTTGTGTCAACCGAACTTCTCAAAAAGGACTTAGATATCGTCTGGAGGTTTTCCGGACTGCCAAAAAGGGATGGGCTGTCAGATCCTGGGATTTTATACCTTCTGGAGCACCAGTTTGTGAGTACACAGGAATACTTGCTAGAACGGAAGACATGGATAGCATGTTGGAAAACAATTATATTTTTGAGATAGATGGCTTGCAAACGATCAAGGGCCTTGGTGGTAGAGAGAGGCGGTCACAAGATGGAGAAATTCCTGAAGATATATTGAACAAATATGATGATCTAAGTTCCGAAAGTGTGCCAGAGTTTTGCATTGATGCTGGATCTACTGGAAATATTGCTAGATTTATAAACCATTGTTGTGAGCCTAATCTGTTCGTGCAGTGTGTTTTGAGCACACACGATGATTTGAGGTTGGCTCGTGTAATGCTGTTTGCTGCGGACAACATACCTCCTTTGCAGGTATCTCATTTTCTTTATTTCTCCCAAATTTTTCTGTGGAGTATTTATACCAATGTCTTGAATTTCTTGAATTGCTTGCAGGAATTAACGTATGACTATGGTTACGCTCTAGATAGCGTGTTGGGCTCCGATGGGAAGATCAAGCAAATGCCATGCTATTGTGGGGCCGCCGACTGCAGGAAGCGATTATTCTAA 2184 0.4203 MVSTRAEKSVKSNSPVMNGVKETKSNSPVTNGVKEDKDLKKLKESKASPTAPRRSSARIQALQKAEKSLAVPNAVVVKEEDKDNVKEGKGKKRSRKSGPEESLVVEEQSVLLLKKKPFACGKDEMKVENAVGQLGDKSDTVKVKDTIRLFNKHYLQFVQEEEKRCVRAETQPKDANSPKKSSQKASKSKKGAPHVDSKKPAKRPDLKAVSKMMENNEILYSEKRIGSIPGIEVGYQFYSRAEMVAVGFHSHWLNGIDYMGQSYAKAYSFEFPIAIAIVLSGMYEDDQDNAEDVVYTGQGGHNLTGDKRQIQDQKLERGNLALKNCVEQCVPVRVIRGHDSSSSYSGKVYTYDGLYKVVNYWCETGLSGFKVFKFRLRRLEGQPTLTTNQVYFTHGRVPQSIAEIRGLVCEDITGGQEDIPIPATNVVDDPPVPPSGFTYCKSLKVAKNVKLPTNAVGCKCKGSCNDPTTCACALRNGSDFPYVSRNGGRLVEAKDVVFECGPKCGCGPGCVNRTSQKGLRYRLEVFRTAKKGWAVRSWDFIPSGAPVCEYTGILARTEDMDSMLENNYIFEIDGLQTIKGLGGRERRSQDGEIPEDILNKYDDLSSESVPEFCIDAGSTGNIARFINHCCEPNLFVQCVLSTHDDLRLARVMLFAADNIPPLQVSHFLYFSQIFLWSIYTNVLNFLNCLQELTYDYGYALDSVLGSDGKIKQMPCYCGAADCRKRLF 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3819g00002 727 SMART preset_2 409 505 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium3819g00002 727 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 22 720 - -
Vium3819g00002 727 Gene3D SET domain 402 727 IPR046341 -
Vium3819g00002 727 ProSiteProfiles SET domain profile. 521 670 IPR001214 GO:0005515
Vium3819g00002 727 ProSiteProfiles Pre-SET domain profile. 456 518 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium3819g00002 727 Pfam SAD/SRA domain 225 382 IPR003105 -
Vium3819g00002 727 MobiDBLite consensus disorder prediction 31 48 - -
Vium3819g00002 727 SMART G9a_1 221 382 IPR003105 -
Vium3819g00002 727 Pfam SET domain 532 662 IPR001214 GO:0005515
Vium3819g00002 727 MobiDBLite consensus disorder prediction 166 208 - -
Vium3819g00002 727 MobiDBLite consensus disorder prediction 76 102 - -
Vium3819g00002 727 SUPERFAMILY SET domain 405 661 IPR046341 -
Vium3819g00002 727 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 42 727 IPR025794 GO:0016571
Vium3819g00002 727 Pfam Pre-SET motif 413 513 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium3819g00002 727 ProSiteProfiles Post-SET domain profile. 711 727 IPR003616 -
Vium3819g00002 727 MobiDBLite consensus disorder prediction 189 208 - -
Vium3819g00002 727 MobiDBLite consensus disorder prediction 1 105 - -
Vium3819g00002 727 SUPERFAMILY PUA domain-like 208 400 IPR015947 -
Vium3819g00002 727 ProSiteProfiles YDG domain profile. 226 378 IPR003105 -
Vium3819g00002 727 SMART set_7 521 684 IPR001214 GO:0005515
Vium3819g00002 727 SMART PostSET_3 711 727 IPR003616 -
Vium3819g00002 727 Gene3D - 208 395 IPR036987 -
Vium3819g00002 727 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3819g00002 Vium-Chr3819 32495 50084 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3819g00002 212 727 EF-hand Containing Proteins AT5G13960 63.077 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium3819g00002 SAD_SRA 5.8e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3819g00002 K11420 - gmx:100796701 1041.57